Protein

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Genbank accession
YP_008126393.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARTVPGTGAVIEPIFDDVFGVKAVKVVNGGSGYDVADPPRLVITGCGIPTAEALLYPIIDEDSGKIVHVRVLDRGRGYDPLRLQIIPEQETPDVVTSFDFNRIWQSHPNSLTRGTFALDSNNDITDRLRIESDNHPKPTPFQTERVPGGGPLIDRNFDQTFILRAGKDVPFGIGRVEQKDKVTGILANGGLLHTPDWDTDGGTLPGFSIDTVKYPYVKSANEYDAITEGNVYYYHSSKTLEEFSLDNGVFDWGNIQQFTWNVKVEHDNVMLQVADLDETLGSVEVGRQCEEIGGEAQGSIAKIIRNGQGDITHVYLRAVGTENAFAEDDLVLGSNGFQFRVDAAPTVFTNGIFYIDFGPDAEEFGSFVPGQFYLAPENIQVQRNYLIRWNQSDASNQPSVDHPLGHPMQFSTTQDGLLNGGTLYYNSTGVSAAPAADYENEYQSIFIMNADETARIYYYCKNHRYMSGYTGHEGYMTLSSVVEEEEVTNDYYVGEFFKGQTTINPDDLISQYSGELLRTTLEDTGTGTGTNGGFNIGRHFRYATGSGNRHVAFRLDLRNVFTLDLEVIRGNETNGGELPDIGEDLRIFFSGTVYGSSVVAAYNDTSFDTIKTVTVGIPPDSRNENQLVYVYMLGADGSSFDHWGLRAVTYGGGDDDFARHPNGHSKIIGMSFDGYPIYGPFGYDSTGSVAREVSSYRLKTDAEMPGARPLVSTTGTVTYNITVSGGSFLFDGSTVPFVSLDRGKTYIFNQDDSSNNDQFLLISETDDGWHGTVPITIGDTNQLYAGQGISYYIDGSAVTYATYVSQFNAASQREIRFEVPVDAPRLLYLFAYSNAGYSIRSVQDKYLRGDLVEDYIYEEGLGTLDEYNGKFAVTPEYPNGTYAYFMTEDSSGNPVYPYAIGPKFYGTPLFEGDAVPQQQTILPTGAKGQVILNDTGQISYVKMSASGDNYFGAANARILGGQGTGATGSPIVQTITGLTLTSAGRQYATPPTVIFEGGGGQGAQGRADIDTLGKVTSISVADSGEFYQEPPYVLITGGGGLGAEAVARIDQGAVVGIDVTNPGEGYTSQPNVIFTKLVNLKRKTRARQAFNSSEIYLTGLVKDVAAADTEIFVDSTTAYPGSGDIILGTETISYTSKTDTKFSGLTRGVNFNYDQRVILDSGQDVNGVSTYQFNVGDRVIRRVENAGNKVAKVYDWNPSTKELLVTFEVDELAFIDGGIPSTEDAIVQFDAGVASSAPGGFLPHVVVNSVGDNIFLLTNPPSLLADRTFEDDDELDGAGDGIPDLVNTGTDYESQISLDGGIYSSLYGIEETVGGQNTTLFQVGDSVKDGSIPFKYANISAAGALSDGVEHNAVVYLYLDSDFSNGQNYSVNEIVTGSVSGVRGTVVSWDPSAQLLIVNGVVPFNTGNINIGVNGLLYEFSHNSTVVDFIIQNPGTNYSAVPTVAIENTGDIQCTATVNMTTAGDQVASITITNGGYGIEQTVDGSYNLHPTVTFTNDAGDSTGSGAVAQAVLGGERINGNGGASYRIKRIEYQTVIRS
Physico‐chemical
properties
protein length:1540 AA
molecular weight: 166111,91860 Da
isoelectric point:4,39896
aromaticity:0,10455
hydropathy:-0,25357

Domains

Domains [InterPro]
DC_1338
ATT
1–1000
DC_1338
IPR025924
STR
664–725
IPR025924 DC_0155
IPR025924
STR
844–891
IPR025924
YP_008126393.1
1 1540
Architecture
ATT
STR
ATT 1-1000 | STR 1001-1540
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008126393.1
1 1540
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,8621
Central domain 156 1096 942 0,2931
C-terminal 1097 1540 443 0,0287
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-1096
C-terminal
1097-1540

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-IOM18
[NCBI] 		754039 Uroviricota > Caudoviricetes > Pantevenvirales > Tefnutvirus > Tefnutvirus siom18
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008126393.1 [NCBI]
Genbank nucleotide accession
NC_021536 [NCBI]
CDS location
range 61154 -> 65776
strand +
CDS
ATGGCAAGAACTGTCCCTGGAACTGGCGCTGTCATCGAACCTATTTTCGATGATGTATTTGGCGTTAAAGCGGTAAAAGTTGTTAACGGTGGGTCTGGGTATGATGTTGCAGATCCTCCTAGATTAGTAATTACTGGGTGTGGTATTCCCACTGCAGAAGCACTACTATACCCAATTATTGATGAAGATTCTGGTAAAATTGTTCATGTTAGAGTTTTAGATAGGGGTAGAGGATACGACCCATTAAGACTCCAAATCATTCCAGAACAAGAAACACCTGACGTTGTAACTTCATTTGATTTTAATAGAATTTGGCAATCACATCCAAACTCTTTAACTAGAGGAACTTTTGCATTAGATTCTAATAATGATATTACAGACAGATTAAGAATTGAATCTGACAATCATCCCAAACCAACTCCATTTCAAACCGAGAGAGTTCCTGGCGGCGGTCCTCTTATTGATAGAAATTTTGACCAGACTTTTATTCTTCGAGCAGGAAAGGATGTACCTTTTGGGATTGGTAGAGTAGAACAAAAAGATAAAGTAACTGGTATTTTAGCGAATGGCGGATTACTTCACACTCCAGACTGGGATACTGATGGCGGCACTCTCCCAGGATTTAGTATTGATACTGTAAAATATCCTTATGTAAAAAGTGCGAATGAATATGATGCTATAACTGAAGGGAATGTTTATTACTATCATAGTAGTAAAACATTAGAAGAATTTTCCTTAGATAATGGAGTTTTTGATTGGGGGAATATACAGCAATTTACTTGGAATGTTAAAGTTGAGCATGATAATGTCATGTTACAAGTTGCAGACCTTGACGAAACTCTTGGTAGTGTTGAAGTTGGTAGACAGTGTGAAGAGATTGGTGGTGAAGCTCAAGGTTCGATTGCAAAAATTATAAGAAATGGGCAGGGTGATATCACTCATGTTTATCTGAGAGCAGTTGGAACTGAAAATGCCTTTGCTGAAGATGATTTAGTTTTAGGTTCTAATGGATTTCAGTTTAGAGTTGATGCTGCCCCAACAGTATTCACAAATGGAATCTTTTATATTGATTTTGGACCTGATGCTGAAGAATTTGGTTCTTTTGTCCCAGGTCAATTTTATCTCGCTCCAGAAAATATTCAGGTACAACGAAATTATTTGATTCGTTGGAATCAAAGTGATGCTTCTAATCAACCATCAGTAGATCATCCTCTTGGACATCCAATGCAGTTCAGTACGACTCAGGATGGTCTCTTGAATGGGGGAACTTTATACTATAATAGTACAGGTGTATCTGCTGCTCCTGCAGCAGATTATGAAAATGAATATCAATCAATATTCATAATGAATGCGGATGAAACCGCTCGAATTTACTATTACTGTAAGAACCATAGATACATGTCTGGATATACAGGACATGAGGGTTATATGACTCTTAGTTCTGTAGTTGAAGAGGAAGAGGTAACGAATGATTATTATGTTGGAGAGTTTTTTAAAGGACAAACAACAATTAATCCAGATGATTTGATTAGTCAATATTCTGGAGAACTCTTACGTACCACTCTCGAAGATACTGGAACTGGTACTGGTACAAATGGTGGATTTAATATTGGCAGGCATTTTAGATATGCTACTGGTAGTGGAAATAGACACGTTGCGTTTAGACTAGACTTAAGAAACGTATTTACTCTGGACTTAGAAGTTATCCGAGGAAATGAAACTAATGGCGGTGAACTCCCTGATATTGGTGAAGATTTAAGAATTTTCTTCTCAGGAACTGTATATGGTTCTAGTGTTGTTGCTGCTTATAACGATACTAGTTTTGATACTATTAAAACAGTAACAGTAGGTATTCCGCCTGATTCTAGAAACGAAAATCAGTTAGTCTATGTTTATATGCTTGGTGCCGATGGTTCTTCCTTTGACCATTGGGGACTTAGAGCAGTAACTTATGGTGGTGGTGATGATGATTTTGCAAGACATCCAAATGGACACTCTAAAATTATCGGCATGTCCTTTGATGGATATCCGATTTATGGACCTTTTGGATATGACTCTACTGGTTCTGTAGCAAGAGAAGTATCTTCTTACAGATTAAAAACTGATGCTGAAATGCCAGGTGCCAGACCTCTGGTTAGTACAACAGGCACAGTAACATACAATATAACTGTTAGTGGCGGTTCTTTCTTGTTCGATGGGAGTACAGTACCATTTGTCTCTCTTGATAGAGGAAAAACTTATATCTTCAATCAAGACGATTCGAGCAATAATGATCAATTCTTATTGATTTCTGAGACAGATGATGGTTGGCATGGAACAGTACCCATTACGATTGGAGATACTAATCAGTTATATGCTGGTCAAGGTATTTCTTATTATATTGATGGTTCTGCAGTAACTTATGCTACTTATGTTTCTCAATTCAATGCTGCATCTCAAAGAGAGATTAGATTTGAAGTTCCTGTTGATGCTCCTAGACTTCTTTACCTATTTGCATACAGTAATGCTGGATATAGTATTAGAAGTGTTCAAGACAAATATCTTCGTGGAGATTTAGTAGAAGATTATATTTACGAAGAAGGTCTTGGAACCTTAGATGAATATAATGGTAAATTTGCTGTTACTCCAGAATATCCTAATGGAACATATGCATATTTTATGACAGAGGATTCTTCTGGAAATCCAGTATATCCATATGCGATTGGTCCAAAATTCTACGGTACTCCGTTATTTGAAGGTGATGCTGTCCCACAGCAACAGACTATTCTCCCGACTGGTGCAAAAGGGCAAGTAATTCTTAATGATACTGGTCAGATATCTTATGTTAAGATGTCTGCAAGCGGAGATAACTATTTTGGTGCTGCAAATGCAAGAATTCTTGGTGGACAGGGAACTGGAGCAACAGGTTCTCCTATAGTTCAAACTATTACAGGTCTTACTCTTACTAGTGCTGGTAGACAATATGCTACTCCACCTACAGTTATTTTTGAAGGTGGTGGTGGACAGGGTGCTCAAGGCAGAGCAGATATTGATACTTTAGGTAAAGTTACTTCAATTAGTGTTGCTGACTCTGGAGAATTTTATCAAGAACCTCCATATGTTTTAATTACTGGTGGTGGCGGTCTGGGTGCTGAAGCTGTTGCTAGGATTGATCAAGGTGCTGTTGTTGGCATCGATGTTACTAATCCTGGCGAAGGATATACAAGTCAACCAAATGTCATTTTTACTAAACTTGTCAACTTAAAACGTAAAACAAGAGCAAGACAGGCATTTAATTCATCGGAAATTTATTTAACAGGTCTTGTAAAAGACGTTGCTGCGGCAGATACTGAAATTTTTGTAGATTCTACTACAGCATACCCTGGTTCTGGTGATATTATTCTTGGAACCGAAACTATTTCGTATACATCAAAAACTGATACTAAGTTTTCTGGATTGACTAGAGGTGTAAACTTCAACTACGACCAAAGAGTTATTCTCGATTCTGGTCAAGACGTTAATGGAGTATCAACCTATCAATTTAATGTTGGTGACAGAGTTATCCGTAGAGTTGAGAATGCAGGAAATAAAGTTGCTAAAGTTTATGATTGGAATCCTTCTACTAAAGAACTTTTAGTTACTTTTGAAGTTGATGAATTGGCATTTATTGATGGTGGTATTCCCTCCACCGAAGATGCTATTGTTCAGTTTGATGCTGGTGTAGCATCTAGTGCCCCTGGAGGATTTTTACCACACGTTGTTGTAAATTCTGTTGGGGATAATATTTTCCTTCTTACAAATCCCCCATCTCTTTTAGCAGATAGAACCTTTGAGGATGATGATGAACTGGATGGCGCTGGTGATGGTATTCCAGACTTGGTGAATACTGGGACTGATTATGAGAGTCAAATTAGTCTTGATGGTGGTATCTATAGTTCTCTATATGGTATTGAAGAAACTGTTGGTGGACAAAATACAACACTATTCCAAGTTGGCGATAGTGTTAAGGATGGTAGTATTCCATTCAAGTATGCAAATATTAGTGCTGCTGGTGCATTGAGTGATGGCGTTGAGCATAATGCTGTCGTTTACTTGTATCTTGATTCAGACTTTAGTAACGGTCAAAACTATAGTGTTAATGAAATTGTAACTGGATCGGTTTCTGGAGTAAGAGGAACGGTAGTAAGTTGGGACCCATCAGCACAACTTCTCATTGTTAATGGTGTTGTTCCTTTCAATACGGGTAATATTAACATTGGTGTTAATGGTCTTTTATATGAATTCTCTCATAATTCAACAGTAGTTGATTTTATCATTCAAAATCCTGGAACAAATTATAGTGCAGTTCCAACAGTTGCAATTGAGAATACTGGTGATATTCAATGTACAGCGACGGTAAATATGACTACTGCGGGTGACCAAGTTGCTTCTATAACTATCACCAATGGCGGTTATGGAATTGAGCAAACTGTTGATGGGTCGTACAATTTACACCCAACAGTAACATTTACCAACGATGCGGGTGATAGCACTGGTTCTGGTGCTGTAGCCCAAGCGGTTCTTGGTGGAGAGAGAATTAATGGTAATGGTGGTGCATCTTATAGAATCAAGCGAATCGAGTATCAGACAGTTATCCGTTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a76e71a8ee914df381b61a4198f9e283d8ed8ff89d342829e10586723d82e508
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8078
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-IOM18 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank