Protein

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Genbank accession
APD20249.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MADVLVTGIKIGDMPLKGTVSGDEKLPTGDVGDLAVTPNQIKKYTIETGNLVTGTQLDDAIKSVEQTSSVLVGRVQTLEDRTSYVDNTSDLDKPISNATQTALNAKADKVDVDAKLDLKADKDKVVSSFNGQTGAVTLDQSDLVDVGGNFTATPIFQNVPKLTKPDGSSIPEIDSQIQPLVNSLAVHRQGLTPTFDQDYAASIGGYPLNARIMLDNGDIARSTVANNTNNPNVDMTGWEVKLPADLIKDSSGKSQQEVNNSLKLKTFDDLRNFKPIVNGQTVYVGQRSNTYLQGGGLFYADTSDTTSLDNDGTILVGIDGTRWKRKWNTHADPCWFGADYTGTEDCSAQVQKAVDVSYGRVWFGNADRSFKMMTPVGLPTNSIVGDMLMEICGDGARVWVYSNTGIFTSKRSIGLETSTDDLYTAALEIGRGLRFQGDGVSQSVVVNGDRLYNVNMKGGRYLRISALVRATQPRRNETTGYVQSVTIEENHLALCNRIIDSKRGFNVTVSRNFCESCYGGVYLDGDGSPAVNVIRCDGNLWESSGVFAKLGAVYAGTFIGNYFEGNNTGDLPTLKCLIELGKTGTTGYSSGVTFIGNQFGAAAAYKADVNYADVKFTASLSGTNLDVLAPPTFVGNWTNAYRMWSEGQVVTQFGNAFSGGNARRHQAPKLHTEARVTFDLSRKEFLSSTNLVGGVHTVAEIDTNLISNLASQSSRACTADMNIFMQMKTASNVVLGAAVAKVSLVVQGSEGIGTGATTDVYVAASLTGFTQLEGGVIDTVNNVSLFKHFTSPVLTIERVGTKYLLKLSGYVAASGSLYGATAKVFSSTTMTIYSLNSGASVAGQIYPT
Physico‐chemical
properties
protein length:848 AA
molecular weight: 90656,49150 Da
isoelectric point:5,30475
aromaticity:0,07901
hydropathy:-0,17500

Domains

Domains [InterPro]
DC_0704
ATT
1–355
DC_0704 DC_0935
cd20481
STR
266–669
cd20481
APD20249.1
1 848
Architecture
ATT
STR
RBD
ATT 1-355 | STR 356-669 | RBD 670-848
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APD20249.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 347 347 0,9958
Central domain 348 659 313 0,9912
C-terminal 660 848 188 0,9890
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-347
Central
348-659
C-terminal
660-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage AM24
[NCBI] 		1913571 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Acinetobacter baumannii
[NCBI] 		470 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD20249.1 [NCBI]
Genbank nucleotide accession
KY000079.2 [NCBI]
CDS location
range 19770 -> 22316
strand +
CDS
ATGGCTGATGTATTAGTCACAGGTATTAAAATTGGGGATATGCCCCTTAAAGGTACTGTTTCAGGGGATGAAAAGTTACCTACAGGAGATGTGGGAGATTTAGCTGTTACTCCTAATCAAATTAAAAAGTATACGATTGAAACAGGTAATTTAGTTACAGGAACTCAGCTTGATGATGCTATTAAGTCAGTGGAGCAAACATCATCAGTGCTTGTTGGAAGAGTGCAGACGCTAGAAGATAGAACTTCTTATGTAGATAATACATCTGATCTTGATAAGCCTATCAGCAACGCCACACAAACTGCTTTGAATGCTAAGGCAGATAAGGTAGATGTAGACGCAAAGTTAGATCTCAAAGCTGACAAAGATAAAGTAGTTTCTTCTTTTAATGGTCAAACTGGTGCAGTTACACTAGATCAATCCGATCTTGTTGATGTTGGTGGTAATTTCACTGCAACACCAATTTTTCAAAACGTACCTAAATTAACAAAACCTGATGGTAGCTCTATACCAGAGATTGATTCTCAAATTCAACCATTAGTAAATAGTCTAGCAGTCCATAGACAAGGATTAACGCCGACATTTGATCAAGATTACGCTGCATCTATTGGTGGCTATCCATTAAATGCGCGCATTATGCTTGATAATGGGGATATTGCTCGCTCTACCGTTGCGAATAACACTAACAACCCAAATGTCGATATGACTGGATGGGAGGTTAAACTACCTGCTGACTTGATTAAGGACTCTAGTGGAAAATCTCAACAAGAGGTAAATAATAGCCTTAAATTAAAGACTTTTGATGATCTAAGAAACTTTAAGCCAATAGTGAACGGTCAAACGGTTTATGTTGGGCAAAGAAGCAACACATATTTGCAAGGTGGTGGACTTTTTTATGCTGATACATCTGATACCACTAGCTTAGATAATGATGGGACAATTCTAGTTGGTATTGATGGCACAAGATGGAAGAGAAAATGGAATACTCACGCAGACCCTTGCTGGTTTGGTGCTGATTATACAGGTACGGAGGATTGTTCTGCCCAAGTACAGAAAGCAGTTGATGTATCATATGGACGCGTTTGGTTTGGAAATGCTGATCGAAGTTTCAAAATGATGACACCTGTTGGACTGCCAACTAATAGTATCGTTGGCGACATGCTAATGGAAATCTGCGGAGATGGGGCTAGGGTTTGGGTTTACTCAAATACAGGAATTTTTACATCAAAGAGATCAATAGGGTTAGAAACATCAACCGATGACCTATATACAGCAGCTCTTGAGATCGGGCGTGGTTTGAGATTTCAGGGTGATGGAGTAAGTCAGTCAGTCGTTGTTAATGGTGATCGTCTTTATAACGTTAATATGAAAGGTGGTCGATATTTGCGAATATCAGCACTAGTTAGAGCAACACAGCCACGCAGGAATGAAACAACAGGATACGTACAATCCGTGACGATTGAGGAAAATCATCTAGCCCTTTGTAATCGTATCATTGATTCTAAGCGCGGATTTAATGTCACAGTTAGTCGAAATTTTTGTGAGTCGTGCTATGGAGGTGTTTACTTAGATGGTGATGGTAGTCCAGCAGTAAACGTTATTCGTTGTGATGGGAATCTATGGGAGTCTAGCGGGGTATTTGCAAAACTTGGTGCTGTTTACGCTGGCACATTTATTGGAAACTATTTTGAAGGGAATAATACTGGTGATTTACCCACACTTAAATGTCTTATTGAGTTGGGAAAAACTGGAACAACTGGGTATTCAAGTGGAGTAACATTTATTGGTAATCAGTTTGGTGCTGCTGCTGCTTACAAGGCAGATGTTAATTATGCTGATGTTAAGTTTACTGCATCATTAAGCGGAACTAATTTAGATGTGTTGGCGCCACCGACTTTTGTTGGGAACTGGACAAATGCATATAGAATGTGGTCGGAAGGTCAAGTAGTTACACAATTCGGCAACGCATTTAGTGGTGGTAATGCGCGAAGACATCAAGCACCAAAATTACACACAGAAGCCAGAGTCACTTTTGATCTATCTCGAAAGGAATTTTTAAGCTCTACGAACTTGGTTGGCGGTGTTCATACAGTTGCAGAAATAGATACAAATTTAATATCGAATCTAGCAAGCCAATCATCTAGGGCTTGTACAGCCGATATGAATATATTCATGCAAATGAAGACTGCAAGTAACGTTGTTTTGGGTGCTGCGGTTGCTAAGGTTTCTCTAGTAGTGCAAGGTTCAGAGGGTATCGGTACTGGAGCAACAACAGATGTTTATGTTGCAGCATCTCTAACTGGATTCACTCAATTGGAAGGTGGAGTTATTGATACAGTTAACAATGTTAGCTTGTTCAAGCATTTTACATCACCAGTTTTAACAATTGAGCGAGTAGGTACAAAATACTTATTAAAATTGTCTGGCTATGTTGCAGCAAGTGGTTCTCTGTATGGAGCAACGGCTAAAGTTTTTTCAAGTACAACCATGACTATTTACTCGTTAAATAGCGGTGCTTCAGTAGCTGGTCAAATATATCCAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
72f8b63fe16aafa632f4b1a54d8b3d9117ca2f5a082e3ea2970b5b804490b093
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6300
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for prophylaxis and treatment of hospital infections (variants), strains of bacteriophages, used for obtaining thereof Aleshkin,A.V., Volozhantsev,N.V., Verevkin,V.V., Krasilnikova,V.M., Myakinina,V.P., Popova,A.V. and Svetoch,E.A. 2016-10 — GenBank
Phagebiotics in treatment and prophylaxis of healthcare-associated infections Aleshkin,A.V., Ershova,O.N., Volozhantsev,N.V., Svetoch,E.A., Popova,A.V., Rubalskii,E.O., Borzilov,A.I., Aleshkin,V.A., Afanas'ev,S.S., Karaulov,A.V., Galimzyanov,K.M., Rubalsky,O.V. and Bochkareva,S.S. 2016 28090384 GenBank
Characterization of myophage AM24 infecting Acinetobacter baumannii of the K9 capsular type Popova,A.V., Shneider,M.M., Myakinina,V.P., Bannov,V.A., Edelstein,M.V., Rubalskii,E.O., Aleshkin,A.V., Fursova,N.K. and Volozhantsev,N.V. 2019 30895405 GenBank
Determination of Bactericidal Activity Spectrum of Recombinant Endolysins of ECD7, Am24, Ap22, Si3, and St11 Bacteriophages Vorob'ev,A.M., Anurova,M.N., Aleshkin,A.V., Gushchin,V.A., Vasina,D.V., Antonova,N.P., Kiseleva,I.A., Rubalskii,E.O., Zul'karneev,E.R., Laishevtsev,A.I., Mekhtiev,E.R., Kaminskii,V.V., Bakhrushina,E.O., Bochkareva,S.S. and Karaulov,A.V. 2021 33788112 GenBank