Protein

View in Explore
Genbank accession
AGH07673.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MVYNGIMKNKHLEHPEDSILTLGKEGAIDVIKFLKSKRNQISVKYDGAPAIVYGTNPENGRFFVGTKSVFNKKKVKINYSHADIELNHGHIPNVASILHTCLECLPTDHGVYQCDFIGYGGENTFKPNTITYKFDKVIKQSVVVATHTQYIGKTIQDLDAVFHYRNNNYCNLDCTNLRHYQVDTHANMDSRLNIKIELLFALARTLVRFVEFPTLKEGKALKIIVNSYVRQGKKLIPEQLASDTGYSKNLFHLYNMIIEIKELLMQSITASEDVECLIDGQPYEHEGYVMTNKYGTYKLIKRQRFSYANFNMKKTWGVPVE
Physico‐chemical
properties
protein length:321 AA
molecular weight: 36802,89910 Da
isoelectric point:8,87815
aromaticity:0,10592
hydropathy:-0,34673

Domains

Domains [InterPro]
IPR046234
STR
9–241
IPR046234 IPR046234
AGH07673.1
1 321
Architecture
STR
STR
STR 9-241 | STR 247-314 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07673.1
1 321
Domain Start End Length (AA) Confidence
N-terminal 1 130 130 0,1667
Central domain 131 310 181 0,3411
C-terminal 311 321 10 0,9975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-130
Central
131-310
C-terminal
311-321

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6a
[NCBI] 		682650 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07673.1 [NCBI]
Genbank nucleotide accession
HQ317391 [NCBI]
CDS location
range 163057 -> 164022
strand +
CDS
ATGGTGTATAATGGTATTATGAAGAACAAACACCTAGAACACCCAGAGGATAGTATCCTGACCCTTGGCAAGGAAGGTGCTATTGATGTAATCAAGTTTTTGAAGAGTAAGAGAAATCAAATATCAGTCAAGTATGATGGTGCCCCTGCCATTGTGTATGGAACTAACCCTGAGAATGGTAGATTCTTTGTTGGTACTAAATCAGTATTCAACAAGAAGAAAGTCAAGATAAACTATTCTCATGCAGATATTGAATTGAATCATGGTCATATCCCAAACGTAGCAAGTATTCTACACACTTGCCTTGAGTGTTTGCCTACAGATCATGGTGTATATCAATGTGACTTTATTGGTTATGGTGGTGAGAATACTTTCAAACCAAACACTATTACCTACAAATTTGATAAAGTAATCAAACAGTCAGTTGTTGTAGCAACTCATACTCAATATATTGGTAAAACTATTCAAGATTTAGATGCAGTATTCCATTACAGGAACAATAATTATTGCAATCTCGACTGTACCAACTTGAGACACTACCAAGTGGATACTCATGCTAACATGGATTCCCGCTTAAATATCAAGATCGAACTTTTGTTTGCTCTTGCTCGCACGTTAGTACGTTTTGTGGAGTTCCCTACTCTCAAAGAAGGAAAAGCACTAAAGATAATCGTCAACAGTTATGTGAGACAAGGTAAGAAACTTATCCCTGAGCAACTTGCAAGTGATACAGGATACTCAAAAAACTTGTTTCACTTATACAATATGATTATTGAGATAAAGGAACTGTTGATGCAAAGTATCACAGCATCAGAAGATGTTGAGTGCCTTATTGATGGTCAACCCTATGAACATGAGGGTTATGTTATGACCAACAAATATGGTACATACAAACTTATCAAACGTCAACGCTTCAGTTATGCAAACTTCAATATGAAAAAGACATGGGGTGTGCCAGTTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
41fa1daac07c8af1750bdab33479957b4d5969ae6692b90e4bbd14ab58be480d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7930
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6a Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank