Protein

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Genbank accession
QQG33610.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,55
Protein sequence
MALISQSVKNLKGGISQQPNILRFPEQGSEQINGWSSETEGLQKRPPFVFTKTIGDQNALGTKPLVHLINRDSVEQYYVVFTGQGVRVFDLNGKEYAVTGDLSYVKVGNPRDDLRMVTVADYTFIVNRNMVVHADTAPLYNLKENGDCLINVRGGQYGRTLAFTINGVRIAYKIHNGVGDGAEQAVQETDAQWLVNKLAGLARAHGSFKDWEFNEGPGFIHVIAPGNSQINSLSTEDGYANQLMNAVMHTSQSFSKLPIEAPDGYTVKIVGDTSKTSDQFYVQYDNVKKVWKEVAGWGVQKGLNGGTMPHALVRQPDGSFQMQALPWSQRTCGDMDTNPTPSIVDQTINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLSAQGILSPKSVELNLTTEFDVSDRARPFGVGRGVYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHVPSYIPNGVFSIRGSSTENFISVLSANAPSKIFLYKFLYLNEEIAQQSWSHWELGSNITVLACDSIGSTMYLVLRNQSHTWMCRAHFTKNSIDFPDEPYRLYIDNKVKYVIPKGAYNDDTYTTTVKPVDIYGMEYWTGKFYIVASDGLVSWFDPPRGGWPTGVPVLSMSGNREGETIYVGLAINFRYVFSKFLIKKTADDGSTATEDIGRLQLRRAWVNYEDSGAFTVEVENTSRLFSYDMAGARLGSNALRAGGLNVGTGQFRFPVTGNAQLNEVRITSDHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:795 AA
molecular weight: 88185,09310 Da
isoelectric point:5,97227
aromaticity:0,11195
hydropathy:-0,26302

Domains

Domains [InterPro]
IPR058003
TTP
1–795
IPR058003
QQG33610.1
1 795
Architecture
TTP
TTP 1-795
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQG33610.1
1 795
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9938
Central domain 142 346 206 0,1208
C-terminal 347 795 448 0,2195
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-346
C-terminal
347-795

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PcCB251
[NCBI] 		2798045 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Berlinvirus
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQG33610.1 [NCBI]
Genbank nucleotide accession
MW367418 [NCBI]
CDS location
range 24469 -> 26856
strand +
CDS
ATGGCTCTTATTTCACAATCCGTCAAGAACCTGAAGGGCGGTATCAGTCAACAGCCGAACATCTTAAGGTTCCCCGAACAGGGTTCCGAACAGATTAACGGTTGGTCTTCGGAGACTGAGGGTCTTCAGAAGCGTCCACCTTTTGTCTTCACTAAGACCATTGGAGACCAGAATGCCCTTGGTACCAAACCTCTCGTTCACCTCATCAACCGCGATAGTGTCGAACAGTATTACGTGGTGTTTACCGGACAGGGTGTTCGTGTGTTCGACCTCAATGGTAAAGAGTATGCTGTGACTGGTGACCTGTCCTACGTTAAGGTTGGGAACCCACGAGATGACTTAAGGATGGTCACTGTGGCTGACTATACGTTTATCGTAAACCGTAACATGGTGGTACACGCTGACACTGCCCCTCTGTATAACCTTAAGGAGAATGGGGACTGTTTGATTAACGTCCGTGGCGGTCAGTATGGTCGTACACTGGCATTCACTATTAACGGTGTCCGTATTGCCTATAAGATTCACAATGGTGTTGGTGATGGTGCTGAACAGGCTGTACAGGAGACTGACGCACAGTGGCTCGTTAATAAACTAGCTGGCCTTGCTCGTGCTCATGGTTCCTTTAAGGACTGGGAGTTCAACGAAGGGCCGGGGTTCATCCATGTGATTGCTCCGGGTAACAGCCAGATTAATTCACTGTCCACTGAGGATGGATATGCTAACCAGTTGATGAACGCAGTTATGCACACCAGTCAGTCATTCAGTAAGTTGCCTATTGAGGCACCTGATGGCTACACAGTGAAGATTGTCGGTGACACCTCTAAGACTTCCGACCAGTTCTACGTTCAGTACGACAACGTGAAGAAGGTATGGAAAGAGGTGGCTGGTTGGGGCGTACAGAAGGGACTCAATGGTGGCACGATGCCTCATGCTCTTGTGCGCCAGCCTGATGGTTCATTCCAGATGCAGGCCCTTCCGTGGTCACAGCGTACCTGTGGTGACATGGACACTAACCCGACTCCGTCTATTGTTGACCAGACGATTAACGATGTGTTCTTCTTCCGTAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCCCGTACATCCAAGTATTTCTCATTGTTCCCTGCATCCGTGGCTAACCTGTCCGATGATGACCCGATAGACGTAGCAGTGTCCCACAACCGTATCTCCATCCTGAAGTACGCTGTACCGTTCTCCGAAGAGTTGCTCCTATGGTCAGACCAAGCACAGTTCGTACTGTCTGCTCAAGGTATCCTCTCACCGAAGTCCGTAGAGTTGAACCTTACGACCGAGTTCGATGTATCAGACCGAGCTAGACCTTTTGGTGTTGGGCGTGGTGTGTACTTTGCGTCACCTCGTGCTTCCTATACATCACTTAACCGTTACTATGCGGTACAGGATGTCAGCTCTGTGAAGTCCGCTGAGGACATGAGTGCTCACGTTCCGAGCTACATCCCGAACGGTGTGTTCTCTATTCGTGGTTCCAGTACTGAGAACTTTATCTCTGTGCTCTCTGCGAATGCTCCTAGCAAAATCTTCCTCTATAAATTCCTCTACTTGAATGAAGAGATTGCCCAACAGTCGTGGTCGCATTGGGAACTTGGAAGCAACATTACCGTACTGGCCTGTGACTCTATCGGCTCCACCATGTACCTTGTGTTGCGCAACCAGTCCCACACGTGGATGTGCCGTGCCCACTTTACGAAGAACAGTATTGACTTCCCTGATGAACCATACCGTCTGTACATTGACAATAAGGTGAAGTATGTGATTCCTAAAGGTGCATATAATGATGACACTTACACTACCACTGTGAAGCCTGTAGACATCTATGGGATGGAATACTGGACTGGTAAGTTCTACATTGTGGCCTCTGACGGTCTAGTCTCTTGGTTCGACCCTCCGCGCGGTGGTTGGCCTACTGGTGTCCCTGTGTTGTCAATGAGTGGGAATCGTGAGGGTGAGACAATCTACGTCGGCTTGGCTATCAACTTCCGTTATGTGTTCTCTAAGTTCCTCATCAAGAAGACCGCTGATGATGGCTCGACAGCTACCGAGGACATTGGGCGCTTGCAGTTACGCCGAGCGTGGGTGAACTATGAGGACTCTGGTGCATTCACTGTAGAAGTGGAGAACACCTCTCGACTGTTCAGCTATGACATGGCGGGTGCTCGCTTGGGTTCCAATGCGTTACGCGCTGGTGGACTTAACGTTGGTACGGGTCAGTTTCGCTTCCCGGTTACTGGCAACGCACAGTTGAATGAAGTACGCATTACCTCTGACCATACTACGCCATTGAACGTTATTGGCTGTGGCTGGGAGGGTAACTACCTGCGTCGTTCTTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
917507b4eb8cfc7b329cc5bc1767465856414b51ecdcd839041d8054da5ac8c9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3072
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of novel berlinvirus and novel certrevirus lytic for Pectobacterium car. car Petrzik,K., Kmoch,P., Vacek,J. and Brazdova,S. 2021-04-29 — GenBank