Protein

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Genbank accession
XNM21673.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MGLHLWGQNVSINITGCHFRRDHYSTLGNTFGIRIQPRVYAWSPDQSSGSRSEAIVIDGETMCISVDYGIYVDDCLDLQMSNLDLDYIRKNAVSIINVNGGFNLSDSWIAGDGESTEQFFAVSLNANAIQQQKSITGLHCNLHNANPLNNNIGINIAGQNVGPVYIGQSTFVGGWSGIAIFNHTSGGIVIDSCTLANQLYLTGSSDVVVQNSGLTGIEETFKPSNSHHYYRSNRGTPATNGIVNVPVASGATSGTLTIPNADTTKSYSVRPWVVDPATANDTASCSAGVITVNRPIAVGIPLPSTVEYSLF
Physico‐chemical
properties
protein length:311 AA
molecular weight: 33178,52850 Da
isoelectric point:5,19715
aromaticity:0,08039
hydropathy:-0,05177

Domains

Domains [InterPro]
IPR012334
STR
1–311
IPR012334
IPR049104
RBD
240–308
IPR049104
XNM21673.1
1 311
Architecture
STR
STR 1-311
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNM21673.1
1 311
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0069
Central domain 11 232 223 0,9782
C-terminal 233 311 78 0,9746
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-232
C-terminal
233-311

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Moonfish
[NCBI] 		3384869 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNM21673.1 [NCBI]
Genbank nucleotide accession
PQ613263 [NCBI]
CDS location
range 39 -> 974
strand +
CDS
ATGGGGTTACATCTATGGGGGCAAAACGTTTCTATCAATATCACGGGATGCCATTTCCGCCGTGATCATTATTCTACATTGGGTAACACGTTTGGCATTCGCATCCAGCCTAGGGTGTATGCGTGGAGTCCTGACCAGAGTTCAGGATCTCGTAGTGAAGCCATCGTTATTGACGGGGAAACTATGTGTATTTCTGTAGATTATGGCATCTATGTTGATGACTGCCTGGACTTGCAGATGAGTAATCTGGATTTGGATTACATTCGAAAGAATGCCGTGTCTATTATTAACGTTAATGGTGGATTTAACCTATCAGATTCGTGGATAGCTGGCGATGGTGAGTCCACAGAGCAATTTTTTGCAGTTTCTTTAAACGCTAACGCAATCCAACAACAGAAATCAATTACTGGTTTGCACTGTAATTTGCATAATGCCAACCCCCTCAATAATAACATTGGTATTAACATTGCTGGCCAAAATGTTGGGCCTGTATATATCGGCCAGTCTACGTTTGTCGGTGGGTGGTCGGGTATAGCAATTTTTAACCATACAAGTGGGGGTATTGTTATTGATTCGTGTACTTTGGCAAATCAGTTGTACCTAACTGGTTCTAGTGATGTTGTAGTGCAAAATTCTGGATTAACTGGTATTGAGGAAACATTTAAGCCTTCCAATTCTCATCATTACTATCGTTCTAATAGAGGCACACCTGCCACTAATGGGATAGTAAATGTTCCTGTTGCTAGTGGGGCCACTTCAGGAACATTAACTATACCTAATGCAGACACAACTAAGTCGTATAGCGTTCGCCCATGGGTAGTTGACCCAGCTACTGCAAACGATACTGCTTCCTGCTCTGCTGGTGTAATTACAGTAAACAGGCCTATAGCAGTAGGTATCCCACTCCCATCTACAGTGGAATACTCTTTGTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c1ae31d6b5d1f9a33feb2935c126ef07216e67b15293e27bafa63e51824a1d36
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8150
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50