Protein

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Genbank accession
WWO60315.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MATVSDPSFRFATNVFDTDGSDKVYDISFELGYIENEHVVAMSGVEDPETKLLTDMTAHVVNFIDVPAGKRVKVSPVPAKDRKLIIFRQTDISKLLVKFTDGSLMTGRNMDLSATQLIMAIQEIVDGLRSNNLIVEQQIGTVVDLNKIITEIYKEVIELLAAGGIVSVAPRVWSGAYDPDEEDQTDFEIPGADVKDAGFYDTYMNGVGLEPDKDYVVILPTEDDPRSLIRFTKPLVEGDKWFTVLRGYAKPYTGPAPITTLAFPVQTYQGTALFIGKPQEFALIRCMSDNDITATVKLIPESGDNRIGDGSWLNIAARGLGQVTLAADAGVTLAVPAGLLARTRAQNSVITLTCEDADTNVWLVSGDLAIQE
Physico‐chemical
properties
protein length:372 AA
molecular weight: 40528,59240 Da
isoelectric point:4,46024
aromaticity:0,07527
hydropathy:-0,00134

Domains

Domains [InterPro]
DC_0914
STR
2–372
DC_0914
IPR005604
ATT
16–128
IPR005604
WWO60315.1
1 372
Architecture
STR
ATT
STR
STR 2-15 | ATT 16-128 | STR 129-372
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60315.1
1 372
Domain Start End Length (AA) Confidence
N-terminal 1 342 342 0,7669
Central domain 343 361 20 0,0005
C-terminal 362 372 10 0,9967
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-342
Central
343-361
C-terminal
362-372

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage SB4
[NCBI] 		3117473 No lineage information
Host Xanthomonas euvesicatoria
[NCBI] 		456327 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60315.1 [NCBI]
Genbank nucleotide accession
PP079415.1 [NCBI]
CDS location
range 35182 -> 36300
strand +
CDS
ATGGCCACCGTAAGCGACCCGTCGTTCCGCTTCGCAACTAACGTGTTTGACACGGATGGTAGCGATAAGGTCTACGACATTTCGTTCGAGCTCGGCTACATTGAGAACGAACACGTAGTGGCAATGTCCGGGGTTGAAGACCCTGAGACTAAGCTGCTCACCGACATGACTGCACACGTAGTGAACTTTATTGACGTTCCTGCGGGTAAGCGTGTCAAGGTCAGCCCCGTTCCTGCTAAGGATCGCAAGCTGATCATCTTCCGGCAGACGGACATTTCCAAGCTGCTGGTGAAGTTCACTGATGGTTCGCTGATGACTGGTCGCAACATGGACCTGTCGGCAACCCAGCTGATTATGGCGATCCAAGAGATCGTTGATGGTCTGCGTAGCAACAACCTGATCGTGGAACAGCAGATCGGCACCGTGGTTGACCTGAACAAGATCATCACGGAGATCTACAAGGAAGTCATCGAACTTCTGGCTGCTGGTGGTATCGTCTCGGTCGCGCCACGTGTGTGGTCCGGCGCATACGATCCCGACGAAGAGGATCAGACGGACTTTGAGATTCCGGGCGCTGACGTTAAGGACGCAGGTTTCTACGATACCTACATGAATGGTGTGGGTCTGGAGCCCGACAAGGATTACGTGGTTATTCTCCCGACTGAGGATGATCCGCGATCCCTGATCCGATTCACTAAGCCGCTGGTTGAGGGTGACAAGTGGTTCACTGTGCTGCGAGGCTATGCCAAGCCGTACACTGGTCCCGCTCCGATCACCACTCTGGCATTCCCTGTGCAGACGTACCAAGGTACTGCTCTGTTCATCGGGAAGCCGCAGGAGTTCGCATTGATCCGGTGCATGTCCGACAACGACATTACAGCCACTGTCAAGCTGATCCCCGAAAGCGGCGACAACCGTATCGGCGACGGTTCGTGGTTGAACATCGCAGCACGTGGGCTTGGTCAGGTAACTCTGGCTGCTGACGCAGGCGTGACCCTCGCGGTCCCGGCTGGTCTACTGGCCCGTACACGTGCACAGAACTCCGTCATCACCCTCACGTGTGAGGATGCGGACACTAACGTCTGGCTCGTCTCTGGCGATCTGGCAATTCAGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
354fa4d63bebb4dd1ae76323de9253990b71539796c4a3fb9b128da508587e3d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6690
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank