Protein

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Genbank accession
WCD56122.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKVSGAYESVVRGVSEQVPQDRRPGQHYEQINQISDPVRGNARRPGSVLQMETVAGNHTDTTWAKWLADTRYHNTYPFQIGGVEYDITYRTKADSQGLGNTAFAFVYNKTTQTNIPVVLGSAAATLVAGGVSSIVSVGKYLFIAGRNIVPGFTGTDTWNNSANRGRIAVQFRGGAYSRTFTVTLIKTDGTKLVKTYKTKSSSYPTALNTSDIPSTDPAYQGKIAERTAQYNSAVTQWIGDAAADQTPENLAEQFRALFTAAGVTGCSVVNGTLCVDNPLYNEALASDAGDGSLVRAVGGVVTNVDMVSSIHYAGKVVKVRPKKAKQDDALYLKAQPKDTTVTAAFTEVTWIEAAGYEMQPTGCFAIGTVVGGTLYIGGNPAELQSISGDATPGFSKNAVGDQITSPLPYFINRRIDYLGVFQDRLVIGSGATLFFSRPGDYFNWFRQTVLQIEANDPIEVIAQNSEDDTIRWSTLYDRNLVLFGDQKQYTVSGRQVMDPRQPPIIVIQSAYEDAFDAAPVNSGNFVFYADKHNGYTSVHQIQQGAIADNPESVPVSKQLDHYMAGTAVQLVPVTSPNCIFVRTDADRNKVYTYTYLDTATGSDRLFDSWSHWDWDIRLGAIIGMSRHEGDLLIHMLRQGLDKNGVRKMWYAVERFSLDTGLSPRPYADSLRPAASVLVPAASSFLHGGSELAPDSYLAFGTGTWAFLGQTLDKRADFLADYPTAATDAWVGVHYDGEVTPTNPYMRDQDGKAIINGRLTLTKIVVSVADTGGLTVDITTQRGIQRVQDWLGRVLGRAANLVGRASIVTGTVSAPIGREVREVTYTIRSKTFLPLTITAIEWVGQYFNNLRRVK
Physico‐chemical
properties
protein length:854 AA
molecular weight: 93135,41050 Da
isoelectric point:6,48950
aromaticity:0,09836
hydropathy:-0,21979

Domains

Domains [InterPro]
IPR058003
TTP
1–616
IPR058003 IPR058003
DC_0058
STR
1–854
DC_0058
WCD56122.1
1 854
Architecture
STR
STR 1-854
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCD56122.1
1 854
Domain Start End Length (AA) Confidence
N-terminal 1 189 189 0,7689
Central domain 190 388 200 0,3087
C-terminal 389 854 465 0,1931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-189
Central
190-388
C-terminal
389-854

Taxonomy

  Name Taxonomy ID Lineage
Phage Caulobacter phage BL199
[NCBI] 		3020396 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Caulobacter crescentus
[NCBI] 		155892 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Caulobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCD56122.1 [NCBI]
Genbank nucleotide accession
OQ135103 [NCBI]
CDS location
range 25630 -> 28194
strand +
CDS
ATGGCGAAAGTCTCTGGCGCTTACGAGAGCGTCGTCCGAGGCGTCTCGGAACAAGTGCCGCAGGACCGCCGCCCTGGCCAGCACTACGAACAGATCAACCAGATTTCGGACCCGGTGCGTGGAAACGCTCGGCGTCCGGGGTCTGTGCTCCAGATGGAGACTGTGGCGGGAAACCACACGGATACCACCTGGGCCAAGTGGCTGGCGGATACCCGCTACCACAACACGTACCCCTTCCAGATTGGAGGTGTGGAGTACGACATCACGTACCGCACGAAGGCTGACAGCCAGGGGCTGGGTAACACCGCCTTCGCGTTTGTGTACAACAAGACAACTCAGACCAACATCCCCGTGGTCCTGGGCTCTGCTGCTGCCACTCTGGTAGCCGGTGGCGTGTCCAGCATCGTGAGCGTTGGCAAGTACCTGTTCATCGCAGGGCGGAACATCGTCCCTGGGTTTACCGGTACGGATACGTGGAACAACTCGGCTAACCGTGGGCGCATCGCCGTACAGTTCCGGGGCGGTGCGTACTCGCGCACGTTCACCGTTACCCTGATCAAGACGGACGGAACGAAGCTGGTCAAGACCTACAAGACCAAGTCGTCGTCCTACCCCACGGCCCTCAACACGTCCGACATCCCCTCGACCGATCCAGCCTACCAAGGCAAGATCGCCGAGCGCACCGCTCAGTACAACTCTGCGGTTACGCAATGGATCGGGGACGCTGCTGCCGACCAGACCCCGGAGAACCTCGCGGAGCAATTCCGCGCCCTGTTCACCGCTGCTGGCGTCACTGGCTGTTCCGTGGTCAACGGTACGCTCTGCGTCGACAACCCGCTGTACAATGAGGCTCTGGCCTCTGACGCGGGCGATGGCTCGCTTGTGCGCGCCGTGGGCGGCGTGGTCACTAACGTGGACATGGTGTCAAGCATCCACTACGCCGGGAAGGTCGTGAAGGTCCGCCCGAAGAAGGCCAAGCAGGATGACGCGCTGTACCTCAAGGCTCAGCCGAAGGACACCACCGTCACCGCAGCCTTCACCGAGGTCACTTGGATCGAGGCTGCTGGCTACGAGATGCAGCCCACTGGCTGTTTCGCCATTGGGACCGTGGTGGGAGGTACGCTGTACATCGGTGGCAACCCTGCCGAACTCCAGAGCATCAGCGGAGACGCTACGCCAGGGTTCAGCAAGAACGCCGTGGGTGACCAGATCACCTCGCCGCTGCCGTACTTCATCAACCGCAGGATCGACTACCTGGGGGTCTTCCAAGATCGCCTCGTGATCGGCTCGGGCGCAACGCTGTTCTTCTCGCGGCCTGGGGACTACTTCAACTGGTTCCGGCAGACGGTCCTCCAGATCGAAGCCAACGATCCTATCGAAGTGATCGCCCAGAACTCCGAGGACGACACCATCCGGTGGAGCACGCTCTACGACCGGAACCTTGTCCTCTTCGGTGATCAGAAGCAGTACACCGTCAGTGGCCGTCAGGTCATGGACCCGCGTCAGCCTCCGATCATCGTGATCCAATCGGCTTACGAGGATGCCTTCGACGCGGCCCCTGTGAACTCTGGGAACTTCGTGTTCTACGCAGACAAGCACAACGGGTACACGTCGGTTCACCAAATCCAGCAGGGCGCTATTGCGGATAACCCTGAGAGCGTGCCGGTGTCAAAGCAACTCGACCACTACATGGCCGGGACTGCCGTGCAGCTTGTCCCTGTGACCTCGCCCAACTGCATCTTCGTGCGGACGGACGCGGACCGGAACAAGGTGTACACCTACACGTACCTCGACACCGCGACTGGCTCTGACCGCCTGTTCGATAGCTGGTCCCATTGGGACTGGGACATCCGCCTGGGCGCGATCATCGGCATGAGCCGTCACGAGGGTGACCTCCTGATCCACATGCTGCGCCAGGGCCTCGACAAGAACGGGGTCCGCAAGATGTGGTACGCCGTGGAGCGGTTCAGTCTGGACACCGGGCTGAGCCCGCGCCCCTACGCTGACAGCCTGCGGCCTGCGGCCTCCGTACTTGTCCCTGCTGCCTCCAGCTTCCTGCACGGCGGTAGCGAGCTTGCTCCCGACAGCTACCTAGCCTTCGGGACGGGGACCTGGGCCTTCCTGGGCCAGACCCTGGACAAGCGGGCTGACTTCCTTGCGGACTATCCGACTGCTGCGACTGACGCATGGGTCGGCGTCCACTACGACGGCGAGGTTACGCCCACGAACCCGTACATGCGGGATCAGGACGGGAAGGCCATCATCAATGGTCGCCTGACCCTGACTAAGATCGTGGTCAGCGTTGCCGACACCGGAGGTCTTACGGTTGACATCACCACGCAGCGCGGTATCCAGCGAGTGCAAGACTGGCTTGGCCGTGTGCTGGGTCGGGCTGCTAACCTCGTGGGCCGCGCCTCTATTGTCACGGGAACCGTGTCTGCGCCTATCGGGCGTGAGGTGCGTGAGGTGACCTACACTATCAGGTCTAAGACCTTCCTTCCGCTGACCATCACCGCCATCGAGTGGGTCGGTCAATACTTCAACAATCTGCGACGAGTGAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
60e628d2cebf2cd24f9083bc741b1f8a96d669fa2d133898136aac1fb9f7aa4c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3014
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
New Genera and Species of Caulobacter and Brevundimonas Bacteriophages Provide Insights into Phage Genome Evolution Ely,B., Hils,M., Clarke,A., Albert,M., Holness,N., Lenski,J. and Mohammadi,T. 2024 — GenBank