Protein

View in Explore
Genbank accession
WBF81709.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MPHLKAYDKEGNILSIGYDVETEQGSVIIPNLKPHTNYPQGEFYVSWEGDNYESEKVVVPEFTTLESSYKEVTFYAKDILTVKPKTAYDIAVDNGFEGTEEEWVKSIKGEQGPQGPQGPQGPQGEQGIQGIKGDRGLQGPQGPKGDRGADGVDGIDGTMTFEELTEEQKATLKGADGAQGEQGPQGPKGDKGEPGEKGEQGERGPEGSEGPKGDIGPQGPKGDIGPQGPKGDIGEDGIDGEIGPQGPTGPMGPKGDKGNTGEKGEKGNSSVNQTRLPQILRKQYFENLEIPVVNSDNGIVEQINPLNAQAVNYYFIGNVLDINAPETKTADFSQFQQGIVTMCWTDSSVTLSNAKIQTYINTTNTAFALLHIYNGKPVLDKAYISPSMREDYMNDLIKTFGNRNDFEIKLGKGIIFDISRRFTNLATLKTIVDEISANKGDYLQLHFSDDQGYSIYSEILGQNGTTSNDKYLTKKEIMELIDYANNKNVMIVPDFDVPSHSQGWLDLLKAKNPDLYTNVVSDYDTGLADYYGNDTTAKFIESLIEEITTMFYQPKYGDRLVFSIGADEVPGVNVAQIDYVNFVNRMAKKVYERGYYPRMWNDCLTDDGIKMLNDNIEVSYWLQGISSAEKFIEENKMVVNCNFYSLVYSPSLEGKAEGVIDEQLEYVRSNFAENEFCEKENPYTIVDTKDNLKGTAFTFWNEGGNELTDEELLNQVIPIIKTYLTLA
Physico‐chemical
properties
protein length:727 AA
molecular weight: 80390,26160 Da
isoelectric point:4,48388
aromaticity:0,09491
hydropathy:-0,62669

Domains

Domains [InterPro]
DC_0876
STR
6–112
DC_0876 G3DSA:1.20.5.320 DC_1391 IPR025705
IPR050149
Unmapped
105–268
IPR050149 IPR025705 IPR025705 IPR025705
IPR008160
STR
109–157
IPR008160 IPR008160 G3DSA:3.20.20.80
DC_0978
STR
155–222
DC_0978 G3DSA:3.20.20.80
IPR015883
ENZ
413–703
IPR015883
IPR017853
ATT
413–708
IPR017853
WBF81709.1
1 727
Architecture
STR
ATT
STR
STR 6-412 | ATT 413-708 | STR 709-726 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBF81709.1
1 727
Domain Start End Length (AA) Confidence
N-terminal 1 370 370 0,8534
Central domain 371 637 268 0,7092
C-terminal 638 727 89 0,8091
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-370
Central
371-637
C-terminal
638-727

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus virus vB_SurM-PSU5
[NCBI] 		3003796 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus ureilyticus
[NCBI] 		94138 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBF81709.1 [NCBI]
Genbank nucleotide accession
OP913463.1 [NCBI]
CDS location
range 12741 -> 14924
strand -
CDS
ATGCCACATTTAAAAGCATACGATAAAGAAGGTAATATATTATCTATTGGTTATGATGTAGAAACTGAACAAGGGTCAGTTATTATACCTAACTTAAAACCACATACTAATTATCCACAAGGAGAATTTTATGTTTCATGGGAAGGGGATAACTACGAGTCAGAAAAAGTAGTAGTTCCTGAATTTACTACATTAGAATCTTCGTATAAAGAGGTTACTTTTTATGCTAAAGACATCTTAACTGTTAAACCTAAAACAGCTTATGATATAGCAGTAGATAATGGATTCGAAGGAACAGAAGAAGAATGGGTTAAGTCCATTAAAGGGGAACAAGGTCCTCAAGGTCCTCAAGGTCCTCAAGGTCCTCAAGGGGAGCAAGGTATTCAAGGTATTAAAGGAGATAGAGGTTTACAAGGTCCACAAGGACCGAAAGGTGATAGAGGTGCAGATGGTGTTGATGGTATAGATGGTACCATGACATTTGAAGAATTAACTGAAGAACAAAAAGCAACGCTAAAAGGTGCAGATGGAGCACAAGGAGAGCAAGGTCCACAAGGACCTAAGGGTGATAAAGGTGAACCTGGTGAAAAAGGAGAACAGGGTGAGCGTGGTCCTGAAGGCTCTGAGGGACCTAAAGGAGATATAGGTCCACAAGGTCCTAAAGGAGATATAGGTCCACAAGGTCCTAAAGGAGATATAGGTGAAGATGGAATTGATGGTGAAATAGGTCCACAAGGTCCAACAGGCCCTATGGGACCAAAAGGGGATAAGGGTAACACTGGAGAAAAAGGTGAAAAAGGAAATAGTTCTGTAAATCAAACTAGACTACCTCAAATATTAAGAAAGCAATATTTTGAAAACTTAGAAATTCCAGTAGTCAATAGTGATAACGGAATTGTAGAGCAAATCAACCCACTCAATGCACAAGCGGTAAATTACTATTTTATCGGTAATGTTTTGGATATTAATGCACCAGAAACAAAAACAGCTGATTTTTCACAGTTTCAACAAGGTATTGTAACAATGTGTTGGACTGATAGTTCAGTCACTTTATCTAATGCTAAAATACAAACTTATATAAATACGACAAATACTGCTTTTGCTTTGTTACACATATATAACGGAAAACCTGTCTTAGACAAAGCCTATATCAGTCCGTCTATGAGAGAAGATTATATGAATGACCTAATCAAAACGTTTGGAAATAGAAACGATTTTGAAATTAAATTAGGAAAGGGTATTATTTTCGATATTTCAAGACGTTTCACCAACTTAGCAACATTAAAAACAATTGTTGACGAAATTTCAGCTAACAAAGGAGATTATTTACAACTACATTTTTCTGATGACCAAGGTTATTCAATTTATTCAGAAATTTTAGGGCAGAATGGAACTACAAGTAATGATAAATATTTAACTAAAAAAGAAATTATGGAACTTATAGACTATGCTAATAACAAAAATGTTATGATTGTTCCTGATTTTGATGTCCCAAGTCATTCTCAAGGTTGGTTAGACTTATTAAAAGCAAAAAACCCCGATTTATACACTAATGTAGTGTCTGATTATGATACTGGTTTGGCAGATTATTACGGAAATGATACTACTGCAAAATTTATAGAGAGTCTGATTGAAGAAATTACAACTATGTTTTATCAACCTAAATATGGGGACAGATTAGTTTTCTCAATTGGAGCCGATGAAGTACCTGGTGTCAATGTTGCTCAAATTGATTATGTGAATTTTGTCAATAGAATGGCTAAAAAAGTTTATGAGAGAGGTTATTATCCTAGAATGTGGAATGACTGTCTTACAGACGATGGTATTAAAATGTTAAACGATAATATTGAGGTGTCTTATTGGCTACAAGGGATATCTTCTGCCGAGAAATTTATTGAGGAAAATAAGATGGTAGTTAATTGTAATTTCTATTCTCTAGTTTATAGTCCGTCTTTAGAGGGGAAAGCTGAGGGTGTCATTGATGAACAATTAGAGTATGTACGTTCTAATTTTGCTGAAAATGAGTTTTGTGAGAAAGAAAATCCATATACAATAGTTGATACTAAAGATAATTTAAAAGGTACAGCTTTTACTTTTTGGAATGAAGGTGGTAACGAATTAACAGATGAAGAATTGTTAAATCAAGTTATACCAATTATAAAAACATATTTAACACTTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bf7c6b3fb8d27eedc50d5f74ae51e6a7e1cc3704b79a0126e485586dc528c123
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6977
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Staphylococcus virus vB_SurM-PSU5 Kwon,H., Park,S.Y. and Kim,J.H. 2016-07-06 — GenBank