Protein

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UniProt accession
A0A067YBJ9 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSLTKLTKPRARWATFRLNVADAVLRSLYEKILDNGVSGKDFGAVGDGIADDTKALELLFSYGGHVRLHPGTYRVSRRVNLSNGTKVIGGGHNSTFILAADKVSGDLTTMIGTSGTSSNLVTDAGIHGVTLDANFKFQSCAFMAWMNSCSFEDIKVRNPLKQLEENYRGGFIVLKSSFIHINKFRAYGIYQHDDISSSEYQSLSFTNSHHCWVKDAYVTQSDKAYHVGGKSSFIHFSEVEAVNTRNNGLYLIEDVSNITFNGFLLKATQEGIVMNADGKDRGIVINDGTISESTSRALALRSGEGYQLSNISVYNCYSGMAQSTNTEYSGVKNLQATNITIKGCKTERPLYLARNKNISISNLKILDAPTFTGNDVCRIAEDCDDISITDLYIDTRSNPLMYGIYIAPETGGSPNITVDGYEFKGITRDFVTKENSADTLFARGKLGQYNGTVKVIKGEGGSIGILSQDASVGAGQSVGEFYHEQSDPSGLGAGKVFSVKTSSLTSVGSTYQTEIYGRDTELVSVIKGGTMTIVLPTSPTGLPSGAIWNDSGTIRVVG
Physico‐chemical
properties
protein length:558 AA
molecular weight: 60290,91750 Da
isoelectric point:6,43198
aromaticity:0,08781
hydropathy:-0,20860

Domains

Domains [InterPro]
IPR012334
STR
19–457
IPR012334
IPR024535
ENZ
40–235
IPR024535 IPR011050 DC_1723
IPR011050
STR
40–317
IPR011050
A0A067YBJ9
1 558
Architecture
STR
RBD
STR 19-457 | RBD 458-558
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A067YBJ9
1 558
Domain Start End Length (AA) Confidence
N-terminal 1 52 52 0,9755
Central domain 53 457 406 0,9803
C-terminal 458 558 100 0,9256
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-52
Central
53-457
C-terminal
458-558

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage phi-A318
[NCBI] 		1151014 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Kaohsiungvirus
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGZ17768.1 [NCBI]
Genbank nucleotide accession
KF322026 [NCBI]
CDS location
range 38781 -> 40457
strand +
CDS
TTGTCACTAACTAAATTAACCAAGCCACGTGCTCGGTGGGCTACCTTCAGGCTTAATGTTGCTGACGCAGTTTTGAGAAGTCTGTATGAAAAGATTCTAGATAATGGTGTATCTGGTAAAGACTTTGGTGCAGTTGGTGATGGTATTGCTGATGACACTAAAGCACTAGAATTGTTGTTCAGCTATGGAGGCCATGTAAGGCTTCATCCAGGTACTTATCGTGTATCAAGAAGGGTTAACCTCTCAAACGGCACTAAGGTTATAGGAGGTGGTCACAATAGTACTTTCATCTTAGCAGCAGACAAAGTGAGTGGCGACCTGACGACCATGATAGGCACAAGTGGAACAAGCTCTAACCTAGTAACAGATGCAGGTATTCATGGGGTTACACTTGATGCCAACTTTAAATTCCAATCATGTGCATTTATGGCGTGGATGAACTCGTGCTCTTTCGAAGACATAAAAGTCAGAAACCCACTGAAGCAGTTGGAAGAAAACTACAGAGGCGGATTTATTGTACTAAAAAGTTCCTTTATTCATATAAACAAATTTAGGGCTTATGGTATTTATCAACATGATGATATATCTAGTTCTGAGTATCAGTCTCTCTCTTTTACAAACTCACACCATTGTTGGGTTAAGGATGCATACGTAACACAAAGTGATAAGGCATATCACGTAGGTGGTAAATCTAGCTTTATACATTTCAGCGAAGTTGAAGCCGTGAACACAAGAAACAACGGACTATACCTAATAGAAGACGTAAGCAATATTACATTCAATGGCTTTCTGTTAAAAGCTACTCAGGAAGGCATTGTTATGAATGCAGATGGTAAGGACAGAGGGATAGTTATCAACGACGGTACAATATCAGAATCTACGTCTAGGGCATTGGCTCTCCGCTCAGGTGAGGGTTATCAACTCAGTAATATTTCTGTCTACAACTGCTATTCTGGTATGGCGCAATCAACTAACACTGAGTATTCTGGTGTTAAGAACCTACAGGCAACTAACATAACCATAAAAGGTTGTAAAACAGAGCGCCCTCTTTACTTGGCTAGGAATAAGAACATTTCAATCAGCAATCTTAAAATACTAGATGCACCTACCTTTACTGGTAACGATGTATGCAGGATTGCAGAAGATTGTGATGATATTAGCATAACTGACCTATACATAGACACAAGAAGTAATCCATTGATGTATGGTATCTATATAGCTCCAGAGACTGGAGGCTCTCCTAATATCACAGTAGATGGTTATGAGTTCAAAGGTATTACTCGTGATTTTGTGACAAAAGAGAACTCGGCAGATACTCTATTTGCTCGTGGTAAGCTAGGTCAATACAATGGGACAGTTAAGGTTATAAAGGGTGAGGGAGGCTCAATAGGTATTTTGAGTCAAGATGCATCTGTAGGTGCAGGTCAGTCTGTTGGGGAGTTCTATCATGAACAGAGTGATCCATCGGGTCTTGGCGCTGGTAAAGTATTCTCTGTGAAGACCTCCTCTTTAACTTCTGTAGGCAGTACTTATCAGACTGAAATATACGGAAGGGACACAGAATTGGTATCAGTTATTAAGGGAGGGACTATGACAATAGTGTTACCAACATCCCCTACTGGTTTGCCAAGTGGTGCTATTTGGAACGACTCAGGTACTATCCGAGTTGTGGGTTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098994 symbiont entry into host cell via disruption of host cell envelope Biological Process IEA:UniProtKB-KW (UniProt)
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
9b6d077dc8f3095b3aee07d97afa9652abbb331fdf68dde6a09fd54933f15fad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7996
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50