Protein

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Genbank accession
AXY85102.1 [GenBank]
Protein name
receptor-binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGSYLTLAEDPGFRAFAQVGLSSAFAIGDSLAHGTYIYNSGLGHEESIARQGTGGTIIQSSDVGIVRPGGVPVGEAVARAYEMLGFPRGTINVPINAGDLNYWDPNWQAPIGSAGRGHDHFYVCNSNIRSYIGKKKEIPANVNHIYSSPTFPYLYTCRGSASNMGSQSVNTVYIQDWYNITPTKVIWYVLNLRYSNGNMVVSGNPFTGSDILISPSNFTIKGVSLPNSGYKFINQNAFGNLGYRSDMEYIGNNAAYTGVFGDTTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGAGKQWYVDTNSNSIGNEHGPVWSPSTVPLRLFPGNVASTYVGDDINPSYPAAGNYYQPLATVWLGLPNAHSTIILTTEVIMGNINTAGMPVRTYGGSAWQVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTAYSYTQEWASRPDSMIFRRNGYIYTIKNLGNGNVELGVIIHAAEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64172,94030 Da
isoelectric point:6,66849
aromaticity:0,11973
hydropathy:-0,16948

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
AXY85102.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXY85102.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4596
Central domain 11 256 247 0,8925
C-terminal 257 593 336 0,6885
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-256
C-terminal
257-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Sw2
[NCBI] 		2316014 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus Sw2
Host Salmonella enterica subsp. enterica serovar Kentucky
[NCBI] 		192955 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXY85102.1 [NCBI]
Genbank nucleotide accession
MH631454 [NCBI]
CDS location
range 110885 -> 112666
strand -
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCCTTCGTCCTAGTTGATGGGACTTATGAGGCTGCCCTAGGTGATGCAGGTAATGGGTACTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAATGGTACTCATAGGGGTTTCCTTAATGGTACACAATCTCAGGTTGGTAGCTATTTAACTCTTGCGGAGGATCCAGGTTTTAGAGCATTCGCTCAAGTAGGCTTAAGTTCTGCTTTTGCAATCGGCGATAGTCTAGCACACGGTACTTATATTTATAATAGTGGATTAGGACATGAAGAGTCTATAGCCAGACAAGGTACTGGCGGAACAATTATACAATCATCAGATGTGGGTATAGTGAGACCTGGGGGTGTTCCGGTAGGGGAAGCGGTTGCCAGAGCATATGAAATGCTTGGATTTCCTAGAGGAACTATTAATGTACCTATAAATGCCGGAGATTTAAACTATTGGGATCCTAACTGGCAGGCACCTATTGGTTCTGCCGGTAGAGGTCATGATCATTTCTATGTATGTAACTCAAATATTCGCAGCTATATAGGTAAGAAAAAAGAAATACCGGCAAATGTAAATCATATCTATTCCTCCCCTACTTTTCCTTATCTATATACCTGTAGAGGTTCGGCTAGTAATATGGGTTCTCAGTCTGTTAACACTGTTTATATTCAGGACTGGTATAATATTACACCTACTAAGGTTATCTGGTATGTTTTAAACCTACGTTACTCTAATGGTAATATGGTGGTTTCTGGTAATCCATTTACTGGTTCTGATATCCTTATCTCTCCATCTAACTTTACTATTAAAGGGGTAAGTTTACCCAACTCTGGTTATAAATTTATTAATCAGAATGCCTTTGGTAATCTAGGTTATCGTTCAGATATGGAATATATAGGTAATAATGCTGCGTATACTGGGGTTTTTGGGGATACTACTGCGCGATGTGAATTCATTGGCTCTAGCAATGGTGGATTATGGTCTCCAGTTAACTATGGGGGTGCTGCCTCTCAGATTAGTTTATATAAGTTTGGTGCAGGTAAACAATGGTATGTAGATACTAATAGTAATTCCATAGGAAATGAACATGGTCCAGTTTGGAGTCCCTCTACAGTTCCACTACGATTATTCCCTGGTAACGTTGCTAGTACTTATGTTGGGGATGATATAAATCCATCTTACCCAGCGGCAGGCAACTATTATCAGCCTTTAGCTACTGTATGGTTGGGTCTGCCTAATGCTCATTCTACTATTATACTAACCACTGAAGTTATTATGGGTAATATTAATACTGCTGGAATGCCTGTGCGTACTTACGGAGGTAGTGCTTGGCAGGTACAAGGTAGACGGCAACAAAGTTATACTGCTGGTGATGGTATATTTCATCAAATACTAACATTGCCTCCAGGATATCTAGTACCATATCATAGTACTACAGCATATAGTTATACACAGGAATGGGCGAGCCGACCAGATAGTATGATTTTTAGAAGGAATGGTTATATTTATACTATTAAAAACCTTGGTAATGGCAACGTTGAGTTGGGTGTTATTATCCATGCTGCAGAAGCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6fc63b9bcf05e1ddb09d26a15e40708dde78d601874d4dbfea0621a77c297d1d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2444
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of Salmonella siphophage Sw2 Nguyen,Q.X., Xie,Y., Liu,M. and Gill,J. 2019-10-10 — GenBank