Protein

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Genbank accession
YP_003858557.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 0,90
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MANNEFMALFGPDSFTANVFSEANAVKYRLVVRGTNNDSAVNSVEVSINGADIINRRTQAARGINLAVIDGTTLALLDYKAFDMYGDPATNGNAIKDYLNSLPANRIVCFYTFDAIKSDDDFLATMRKIGSVAWPETRFFNIPITTTNYSHRSSYSAIYSSTMKKICMENFVGGAGSLKDNTTSFVEVVFDEFSDIGVTGIPERMVDDVQTYQTYQNSGDLYGFHSYGTWIVGSDVFLGDIFKFTGELYCSQELRDAGGEVHLYMWTENSTGQWITSTILRTTGLAPDQWHSLSGYFTVPSDPVNTKMGSQVYHYPSTVKVRLAQCRNVQITKVPREEINRNGAALGVNGVRMQTLSEVDASGNENPIDKLLSLPVSPTGVASDKKIISHNFAELDYIVSDPVEYTSTNTAEYQFKEWTATQQAAVTKASLSSYGLKAGDTIRMQCQMKRDVNAITNGKSAYIIIQFWDANNTYISGINMRDVGTIPNVYSFYKNEGVIPAGAVTFDFGLYRYPNNTNIGTVSAKDVKLSIVR
Physico‐chemical
properties
protein length:533 AA
molecular weight: 58902,36000 Da
isoelectric point:5,24581
aromaticity:0,11069
hydropathy:-0,21932

Domains

Domains [InterPro]
DC_0004
STR
1–533
DC_0004
PS52031
LEC
24–205
PS52031
IPR039477
STR
62–132
IPR039477
YP_003858557.1
1 533
Architecture
STR
STR 1-533
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003858557.1
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 73 73 0,2601
Central domain 74 272 200 0,5746
C-terminal 273 533 260 0,5557
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-73
Central
74-272
C-terminal
273-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage RB16
[NCBI] 		2681599 Uroviricota > Caudoviricetes > Pantevenvirales > Pseudotevenvirus > Pseudotevenvirus RB16
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003858557.1 [NCBI]
Genbank nucleotide accession
NC_014467 [NCBI]
CDS location
range 165958 -> 167559
strand +
CDS
ATGGCGAATAACGAATTTATGGCGTTATTCGGCCCTGATAGTTTCACGGCGAATGTGTTTTCAGAAGCAAACGCCGTGAAATATCGCCTTGTTGTCCGTGGAACGAATAACGATTCTGCGGTCAACTCGGTTGAGGTATCTATTAACGGGGCTGATATTATAAACAGACGAACACAAGCTGCTCGCGGAATTAACCTGGCTGTCATTGATGGAACAACTTTAGCATTATTGGATTACAAAGCATTCGATATGTATGGTGATCCTGCTACGAACGGGAATGCGATTAAAGACTACCTGAATTCACTTCCAGCGAACAGAATTGTGTGTTTTTATACTTTCGATGCTATCAAAAGTGACGATGACTTTTTAGCAACAATGAGGAAAATAGGTTCTGTTGCGTGGCCTGAAACTCGGTTCTTTAATATCCCGATCACCACAACCAATTATTCTCACCGTTCATCCTATTCAGCTATCTATTCATCTACGATGAAAAAGATTTGCATGGAAAACTTTGTCGGTGGTGCTGGTAGCCTGAAAGACAATACGACGAGTTTTGTTGAAGTTGTGTTTGATGAATTCAGTGATATCGGGGTAACTGGTATTCCAGAAAGAATGGTCGATGATGTCCAGACATACCAGACATACCAGAATAGCGGGGATCTTTATGGCTTCCACTCTTACGGGACGTGGATTGTTGGTAGTGATGTTTTTCTGGGCGATATCTTCAAATTCACGGGTGAACTATATTGTTCGCAAGAACTTCGTGATGCAGGGGGGGAAGTTCACCTGTATATGTGGACTGAAAACAGTACCGGACAATGGATCACATCAACCATTCTTCGAACAACTGGATTAGCCCCCGATCAGTGGCATTCATTATCAGGATATTTCACTGTTCCGTCAGATCCAGTAAACACCAAAATGGGTTCGCAGGTATATCATTATCCGTCTACCGTTAAAGTGAGGCTGGCGCAATGTCGCAACGTCCAGATCACAAAAGTACCTCGCGAAGAAATAAACCGGAATGGTGCTGCGCTTGGTGTGAACGGTGTTCGAATGCAGACACTTTCCGAAGTGGACGCAAGCGGAAATGAGAACCCGATTGATAAATTGCTTTCTCTACCCGTTTCGCCTACTGGTGTTGCAAGTGATAAGAAAATCATTTCGCATAACTTTGCTGAACTTGATTATATTGTTTCTGATCCGGTTGAATACACTTCGACAAATACAGCGGAGTACCAGTTCAAAGAATGGACTGCTACCCAGCAAGCGGCGGTAACGAAAGCATCACTAAGCAGTTATGGCTTAAAAGCTGGTGATACGATTCGTATGCAATGCCAAATGAAACGCGATGTGAACGCAATCACTAACGGTAAAAGCGCGTATATCATAATACAGTTCTGGGACGCGAATAATACGTATATCTCAGGGATCAACATGCGCGATGTTGGTACGATCCCTAACGTATATTCATTCTACAAAAACGAAGGGGTTATTCCTGCTGGTGCTGTTACGTTTGATTTCGGTTTATACCGTTATCCAAACAACACAAACATCGGTACGGTATCGGCTAAAGACGTTAAACTGTCAATCGTGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
61f8a244b93f4685b8c1d125af02abfa7cfae5ec9d3207c09e8bee39d6ce5382
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6078
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50