Protein

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Genbank accession
AAL82984.1 [GenBank]
Protein name
PHIKZ083
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MFELLLSSGLTNTPIYSDPYPGPKTLIAGTRELGLYGETTSSELFGYDDAAKLVNMTFGTVINDGQPWLKFSNKNVTCYIPKKPARKSIQKSRLNNAGLRNGDYEVRFMGNIYKFGLLTMAGATSEWQRLLYNVHVSNLNGANWPYKFTDNDLGINQAVAGGISTDGTTNWGRDPGSDPVNDQLYRGYYAIDITSSSSSETGAATQGWRPVVYASGTYPFVKDNVIKLTDFETDNEMAAGAQIGNLVYYYGGKNNANTALRTLNLATGKLTTLQPTGTPIAVKQCSAVAFNGKVYFYGGESATDGVLTKGMQCYDPATNTWEIKSPGTIACRYARGTSLNGLIYILGAADTTATNNRGFTLMYNPTTDTYTSGAAFNDTGVYTQDYSVSVYNNSVCVIGGMVGAGVNTGIISYNQTNNNWSKPITTGIPLGAAINIRPSGELYVIAGENQNNAPIKYYEPRLARWINLGNLETGLVDAGFANTFNNDGKIYVLNGNQNLKYQIS
Physico‐chemical
properties
protein length:504 AA
molecular weight: 54545,27990 Da
isoelectric point:6,62904
aromaticity:0,11111
hydropathy:-0,30635

Domains

Domains [InterPro]
DC_0638
ATT
4–235
DC_0638 PTHR24412
IPR015915
STR
200–478
IPR015915
IPR015915
STR
211–478
IPR015915
IPR015915
STR
217–422
IPR015915
IPR006652
STR
284–324
IPR006652
AAL82984.1
1 504
Architecture
ATT
STR
ATT 4-235 | STR 236-478 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAL82984.1
1 504
Domain Start End Length (AA) Confidence
N-terminal 1 222 222 0,1128
Central domain 223 492 271 0,7909
C-terminal 493 504 11 0,6764
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-222
Central
223-492
C-terminal
493-504

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiKZ
[NCBI] 		2905945 Uroviricota > Caudoviricetes > Chimalliviridae > Phikzvirus phiKZ >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAL82984.1 [NCBI]
Genbank nucleotide accession
AF399011 [NCBI]
CDS location
range 80347 -> 81861
strand -
CDS
ATGTTTGAGTTATTGTTGTCTTCTGGACTAACAAATACGCCTATATATTCCGATCCTTATCCAGGTCCTAAAACACTGATAGCTGGGACAAGGGAATTAGGTTTGTATGGTGAAACAACATCTTCAGAATTATTTGGTTATGATGATGCAGCTAAATTAGTTAATATGACATTTGGAACAGTAATCAATGATGGACAACCATGGTTAAAGTTCTCTAATAAAAATGTTACTTGTTACATACCAAAGAAACCAGCTCGTAAATCAATACAAAAATCACGGCTTAATAATGCCGGACTCCGTAATGGTGACTATGAAGTTAGATTTATGGGGAACATTTATAAATTTGGTTTATTAACAATGGCTGGTGCCACATCAGAATGGCAAAGGTTACTTTATAATGTTCACGTATCTAATTTAAATGGTGCTAACTGGCCTTATAAATTTACAGATAATGACTTAGGTATTAACCAAGCGGTCGCTGGTGGTATTAGCACTGATGGTACTACTAACTGGGGAAGAGACCCAGGTAGTGATCCAGTTAATGACCAGCTCTATCGTGGCTACTATGCGATTGATATAACTAGCTCGTCAAGTAGTGAAACGGGTGCTGCAACCCAAGGTTGGCGTCCAGTGGTTTATGCTAGTGGTACATATCCATTCGTTAAAGATAATGTTATTAAACTTACTGATTTTGAAACTGATAACGAAATGGCAGCAGGTGCCCAAATAGGTAACTTAGTCTATTATTACGGTGGTAAGAATAATGCTAATACTGCTCTACGTACATTGAATTTAGCCACGGGTAAGTTAACAACATTACAACCAACTGGTACACCTATAGCAGTTAAACAATGCTCGGCTGTTGCATTTAATGGTAAAGTATATTTCTATGGTGGTGAAAGTGCCACAGATGGTGTACTCACTAAAGGTATGCAGTGTTATGATCCTGCAACTAATACATGGGAAATAAAATCACCAGGTACGATAGCTTGTCGGTATGCACGTGGAACTAGTCTTAATGGGTTAATCTACATATTAGGTGCAGCTGATACAACTGCAACAAATAATCGTGGATTTACATTAATGTACAATCCAACTACAGATACATATACCAGTGGTGCAGCATTTAATGATACTGGGGTATATACCCAAGATTATTCAGTGAGTGTTTATAATAATAGCGTATGTGTTATTGGTGGTATGGTTGGTGCCGGTGTTAATACTGGAATCATATCGTACAATCAAACCAACAATAATTGGTCTAAACCAATAACTACAGGTATACCTCTTGGTGCAGCTATTAATATACGCCCATCTGGTGAACTTTATGTAATCGCTGGTGAAAATCAAAATAATGCACCAATTAAGTATTATGAACCACGATTAGCACGATGGATAAATTTAGGTAATTTAGAAACTGGTTTAGTGGATGCAGGTTTTGCCAATACGTTTAATAACGATGGTAAGATTTATGTTCTAAACGGTAATCAGAATTTAAAATACCAAATTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f7223a1123b9f9113c7cd9b3b8ea4c8474a62d6b43c0f0e2ed5486a45059f42
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8234
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome of Bacteriophage phiKZ of Pseudomonas aeruginosa Mesyanzhinov,V.V., Robben,J., Grymonprez,B., Kostyuchenko,V.A., Bourkaltseva,M.V., Sykilinda,N.N., Krylov,V.N. and Volckaert,G. 2002 11916376 GenBank
Muralytic activity and modular structure of the endolysins of Pseudomonas aeruginosa bacteriophages phiKZ and EL Briers,Y., Volckaert,G., Cornelissen,A., Lagaert,S., Michiels,C.W., Hertveldt,K. and Lavigne,R. 2007 17697255 GenBank
Identification and comparative analysis of the structural proteomes of phiKZ and EL, two giant Pseudomonas aeruginosa bacteriophages Lecoutere,E., Ceyssens,P.J., Miroshnikov,K.A., Mesyanzhinov,V.V., Krylov,V.N., Noben,J.P., Robben,J., Hertveldt,K., Volckaert,G. and Lavigne,R. 2009 19526553 GenBank
Crystal structure and location of gp131 in the bacteriophage phiKZ virion Sycheva,L.V., Shneider,M.M., Sykilinda,N.N., Ivanova,M.A., Miroshnikov,K.A. and Leiman,P.G. 2012 23031178 GenBank