Protein

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Genbank accession
YP_009811260.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MPVMLTSFLLPSNTALPFLVQDIHLKGGLRCVKSSADRDAIKSGARSAGMMVWVSDDKQMYQLADDLTTWEDAKLGNNLVFKSPLKVVQNANNEQEVSLEDSQLIPKADQPGLVLTSGANGALSWSNFGGSAGAGARLNVEYSAQDFINPGENLNFTLDMSQTCMLLVVELNAFDIEIQFHTTDERNDRNPYLFRSTVDFLSDDGVTIEDNTIIKHRRYAFVSVPSGKTHYGVMRNLGSSPAQPKLSVTYLVME
Physico‐chemical
properties
protein length:254 AA
molecular weight: 27943,26050 Da
isoelectric point:4,93103
aromaticity:0,07874
hydropathy:-0,19921

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811260.1
1 254
Domain Start End Length (AA) Confidence
N-terminal 1 127 127 0,9494
Central domain 128 243 117 0,0011
C-terminal 244 254 10 0,9970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-127
Central
128-243
C-terminal
244-254

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811260.1 [NCBI]
Genbank nucleotide accession
NC_048053 [NCBI]
CDS location
range 118602 -> 119366
strand -
CDS
ATGCCGGTAATGTTAACTTCGTTTTTATTACCGTCCAACACTGCTCTACCTTTCCTCGTTCAAGATATTCATTTGAAAGGGGGATTGCGTTGCGTTAAGTCTAGTGCTGATCGTGACGCAATCAAATCAGGCGCTCGCTCGGCAGGCATGATGGTTTGGGTATCCGACGATAAACAGATGTATCAGCTTGCCGACGATCTTACTACTTGGGAAGATGCGAAGTTAGGAAACAATTTAGTTTTCAAAAGTCCTCTCAAAGTAGTTCAGAATGCGAATAACGAACAAGAAGTGAGTCTCGAAGATTCACAACTTATTCCGAAAGCAGATCAACCGGGATTAGTTCTTACGTCGGGCGCTAATGGCGCTCTTTCGTGGAGTAATTTCGGTGGAAGTGCTGGCGCAGGCGCACGATTAAATGTGGAGTACAGTGCTCAGGATTTCATTAATCCGGGTGAAAATCTTAATTTCACTTTGGATATGTCGCAGACTTGCATGTTATTGGTTGTCGAGTTAAATGCGTTTGATATCGAAATCCAATTCCATACAACGGACGAACGTAATGATCGTAACCCGTACCTTTTCCGTTCGACTGTAGATTTCCTTTCTGACGATGGTGTGACTATTGAAGATAACACGATTATAAAACATCGTCGTTATGCTTTTGTGTCTGTGCCGTCAGGGAAAACTCATTATGGTGTGATGCGAAATCTCGGATCGTCTCCAGCGCAGCCGAAACTTTCGGTAACTTACTTAGTAATGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4c9f0b8c05d34b459999863fca6d35b80cea3f4ba394d47a53a8a8ca56b9c0fc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7656
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank