Protein

View in Explore
Genbank accession
AZF94382.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNRIVEPNLVNGLEHVDARYRAEPATETRKKLTALFRVGEVQKAETVRTLSKEQSKEIKEQVYCAAEAVFLNSPERKSEYFARVEKDFCIDKDLMILYSRIFGAVAVGAAVETDDNQVRSYYLQHAAAWGKAKMFQLDLPDLKRPDFIMALCHSPRGTSGVFDVVASTCNHWGLLNTRVLPQEAAAYNLVPSKRGYGAVGSGRYTKHYTAPAWSQLLGIQYTAEDTAWFAGFLTEDDVINLRFRRMRMGAAVKEVTGDDALARELSDKCRIVGTYQFILHPNDVPWGEEYVRMRRDGVDLDSCMSHSWGGYNCPHGVHPCDAYSSAHYGAGDNGLVLVEAQRAGEPVGRGILNTRNNQIVRWYGEHRAQVQLCNAYGIEGDSGALEASWLALIGNGATFAGPYIDGFNDCGDVNEFEGRVYLGTRGLTLEDTDGYYYGGGRQQCCIDGEYYPGDDMQYQEHNDTWYHPDNTGDAETCPVTDEYFSYSDGYWLMIDGEEIRVSWAGYHRIDTHDYANLGGDIGYTLDIDRYRLLANGDWVHLDDAVYDEETDDWYTDEEHAVLLADREAQEEEQDAA
Physico‐chemical
properties
protein length:576 AA
molecular weight: 64799,91350 Da
isoelectric point:4,70044
aromaticity:0,11285
hydropathy:-0,51250

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZF94382.1
1 576
Domain Start End Length (AA) Confidence
N-terminal 1 367 367 0,0009
Central domain 368 565 199 0,8939
C-terminal 566 576 10 0,9947
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-367
Central
368-565
C-terminal
566-576

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Clickz_B7
[NCBI] 		2489624 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Phimunavirus
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF94382.1 [NCBI]
Genbank nucleotide accession
MK095199 [NCBI]
CDS location
range 9098 -> 10828
strand -
CDS
ATGAATCGTATCGTTGAACCTAACTTAGTTAATGGCCTTGAACACGTCGATGCACGTTACCGTGCTGAACCCGCGACAGAGACACGCAAGAAACTCACTGCGTTGTTCCGTGTTGGTGAGGTGCAGAAAGCCGAGACAGTACGAACTCTTTCCAAGGAGCAATCCAAAGAGATTAAAGAGCAGGTGTACTGTGCAGCGGAGGCTGTATTTCTAAACAGTCCCGAACGTAAGTCAGAGTACTTCGCGCGGGTGGAAAAAGATTTCTGTATTGATAAAGACTTAATGATACTGTACTCCCGTATCTTCGGTGCTGTAGCGGTGGGTGCTGCGGTAGAGACAGATGACAACCAAGTGCGCTCTTACTACCTACAGCACGCAGCGGCGTGGGGTAAGGCGAAGATGTTCCAATTGGACCTCCCGGATTTAAAACGCCCAGATTTCATTATGGCGTTATGCCATTCGCCTCGTGGTACTTCTGGGGTTTTCGATGTAGTAGCGAGTACATGTAACCATTGGGGATTGTTAAATACGAGAGTACTTCCCCAGGAAGCAGCCGCATACAATTTAGTTCCTAGCAAGCGTGGATACGGCGCAGTGGGTTCCGGCAGGTACACCAAGCATTACACGGCCCCAGCTTGGTCCCAGTTGTTGGGTATCCAGTACACAGCAGAAGATACCGCGTGGTTCGCTGGATTCCTGACAGAGGATGATGTAATTAATCTGCGATTCCGCAGAATGCGTATGGGCGCAGCGGTGAAGGAAGTAACGGGAGATGATGCGTTAGCTCGTGAACTATCCGATAAGTGCCGCATAGTGGGTACGTACCAGTTCATCCTACATCCTAATGACGTGCCGTGGGGCGAAGAGTACGTCCGTATGCGGCGAGATGGGGTAGACTTAGATAGTTGTATGTCACACTCGTGGGGTGGCTATAACTGCCCACATGGTGTGCATCCGTGTGATGCGTACTCAAGTGCACATTACGGGGCTGGGGATAACGGCTTAGTCCTAGTTGAAGCACAGCGCGCAGGTGAACCGGTAGGGCGCGGTATCTTGAACACGCGCAACAACCAGATTGTGCGCTGGTACGGCGAGCACCGCGCGCAGGTACAACTTTGTAATGCTTACGGTATTGAAGGAGATTCAGGTGCCCTAGAAGCTTCATGGTTAGCATTGATTGGTAATGGTGCTACGTTCGCTGGGCCGTACATTGATGGTTTTAATGATTGTGGAGATGTGAATGAATTCGAGGGGCGGGTGTACTTAGGTACAAGAGGCCTTACACTAGAAGATACAGATGGATACTACTATGGTGGGGGTAGGCAGCAATGCTGTATTGATGGGGAGTACTACCCAGGAGATGACATGCAGTACCAAGAACATAATGATACTTGGTATCATCCAGACAATACCGGAGATGCCGAGACTTGCCCGGTAACAGATGAGTACTTCTCGTACAGCGATGGGTACTGGTTAATGATTGACGGAGAAGAGATCCGTGTGTCATGGGCAGGGTACCATCGCATTGATACACACGATTATGCAAACCTAGGTGGGGATATCGGGTACACTCTGGACATTGACCGGTACCGTCTGTTAGCTAATGGTGATTGGGTGCATCTGGATGATGCGGTGTACGACGAAGAAACCGATGATTGGTACACCGACGAAGAGCATGCTGTATTGCTTGCAGACCGAGAAGCACAAGAGGAAGAACAAGATGCAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e1e41e239a492aaad10df6411085b74aa6165e5f79fad172f3229d92e59320e1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4493
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel 6-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions Carstens,A.B. 2019-05-01 — GenBank