Protein

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Genbank accession
YP_009301713.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,51
Protein sequence
MPIGINSPARNLFLLGSSGAQVVTNFFKLIDQSSTTNNSYVPAEIKYNESDEKYFLSGTAKDINISPNKDFGWFEKRDQAGSAEWDVRVEATQSGVNTTLRAMELDSNDNLIVVGKTGNVPWIAKYSNGGVIDWQSTTNSGDVEYTGITSDSSGNYYACGSTPTSGEAQAFVEKFDTNGNPGWGKSAFMLGRDVVLTKIDANDRGEVVAVGYLEDDTASKGYIIKIDTNTGEVLWDRTLSSQDTTIPFGALNVAATNVEIDDKGQIYVVGTVRRNSFVIKYTAEGNMLWQKETNLPVGTSAPDIQHVGLTVNSLTESVTVASNYFALGADEIYLSNYNKKGDLVWRRSIDKGSSVLSNPSLDNEGAFIYFLFDAGSNTDATYTYGKLSSTGNGLGDFEYNDGTATLIDYQYVGTGSLASDVIGKISDGSVRNDSSDLITYPFNANKLLFDDLATQISNKKRQMDDADSFEYSGSPAIRPADFQELNLLGDNVSGRTWTDTSGKGNDGLAFVNEPFFGAGGTTFDGSSGYFTMPDSEDFNIGSSDFTIELWLYKKNTSTYQHVFRQRDSGSAEMAIVLDIDSTGGDSFASGYFQMEWGANKRFVGVNAGLTNDTWHHLALTKEGTTGRVFVDGVLVGTDTLENVGNYSGDFYVGYWVGGLGYYFDGYMSDFRIVKGTALYTSNFTPPTTQLTNIPGTVLLTCQGDSIVDASPSSHPITITGSVTPTDGGPTHNAAGYWEFDGVDDEITIPYTPNLAFTDAIMSCESWVYVDSLSSAFSIINKRGNRFTQNNNRPYVFEVNNDGRVRWILDDATTVCDTATGLIQTGQWYHLAATHDGTNAKIYINGVQSVSVSSGTSSLDDTGDIPVRIGWRYQNSSINYSDGRIGEIRIYPRALTAAQVFQNYNATKSKYINEAPDTAPKISDSAIVYDSNLLLNYDFGNSACFDFKHNYINYNTKQLPITGVEDISSTIDGYTVTRGGIISNTEVAPDGSRTAVLFRESDGIEGSARIFTAGWRQPDFDGQVHYFSAYVKKAESRYVYVAMYQSDDGADYDGVKFDFDTETLIDADPSANWDRGFTNVGNGWYRIWIGFPINIGVSIYVTVGADDNGSAEGLTSNLVTRNIDSFYTWGWQVTKNALTNTYVSAGTTYSSGKLDPPTTVKNLSSSSYTGNIVGATFNPAGYFEFTPEADHIQLGATNQFAGTNISVEVWVYPTTGQTGNYIWGNYDGGGYVDGDFMLRFDPSGSSAERRPLLQIGTGSNIGSQFVSTTQYDYDNWYHIVCTWDGTTGLIYINGSNQATTRNDGGTGASGTAANNTSPFYIGTGSPLNDSVAGNYGQFRIYNRTLSATEVSQNFNATRSKYGV
Physico‐chemical
properties
protein length:1362 AA
molecular weight: 148169,24710 Da
isoelectric point:4,44483
aromaticity:0,12188
hydropathy:-0,36366

Domains

Domains [InterPro]
DC_0902
ATT
1–493
DC_0902 IPR013320 G3DSA:2.60.120.200 IPR013320
SSF101898
RBD
96–369
SSF101898 G3DSA:2.60.120.200 IPR013320 G3DSA:2.60.120.200
PF13385
LEC
524–674
PF13385 PTHR42535 PF13385
DC_2085
STR
658–893
DC_2085
PF13385
LEC
741–899
PF13385
YP_009301713.1
1 1362
Architecture
ATT
STR
STR
ATT 1-493 | STR 494-913 | STR 1147-1360 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009301713.1
1 1362
Domain Start End Length (AA) Confidence
N-terminal 1 40 40 0,9397
Central domain 41 272 233 0,5321
C-terminal 273 1362 1089 0,4324
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-40
Central
41-272
C-terminal
273-1362

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM32
[NCBI] 		1278479 Uroviricota > Caudoviricetes > Pantevenvirales > Bristolvirus > Bristolvirus rhodeisland
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009301713.1 [NCBI]
Genbank nucleotide accession
NC_031235 [NCBI]
CDS location
range 175007 -> 179095
strand -
CDS
ATGCCAATTGGAATTAATAGTCCTGCCAGAAACCTATTCTTGTTGGGTTCATCTGGAGCACAAGTTGTCACTAACTTCTTCAAGTTGATTGATCAATCTTCAACAACAAACAATAGTTACGTACCAGCAGAAATAAAATATAACGAATCTGATGAGAAGTATTTCCTGTCAGGAACAGCAAAAGATATCAACATTTCCCCAAATAAAGATTTTGGTTGGTTCGAGAAGAGAGATCAAGCAGGATCTGCTGAGTGGGACGTAAGAGTAGAAGCAACACAATCTGGTGTCAATACTACTCTCCGTGCTATGGAGTTGGATAGCAACGACAATCTAATTGTTGTTGGTAAGACTGGTAATGTTCCTTGGATTGCTAAGTATTCTAATGGTGGTGTAATCGATTGGCAATCTACTACTAATAGTGGAGACGTAGAATATACAGGAATTACATCTGACAGTAGTGGAAATTATTATGCTTGTGGTAGCACACCCACATCAGGAGAAGCGCAAGCATTTGTAGAGAAATTTGATACTAATGGCAATCCTGGTTGGGGTAAGTCAGCATTCATGTTAGGTAGAGATGTTGTTCTCACAAAAATTGATGCCAACGACAGAGGAGAAGTAGTTGCTGTTGGATATCTTGAAGACGACACTGCCAGCAAAGGATACATTATCAAGATTGATACAAATACAGGTGAGGTTCTATGGGATAGAACACTCTCATCTCAAGATACTACAATTCCTTTTGGAGCATTGAATGTAGCAGCAACAAATGTCGAGATAGATGACAAGGGACAGATTTATGTTGTCGGTACTGTACGTAGAAATTCTTTTGTAATTAAATACACTGCCGAAGGTAATATGCTTTGGCAAAAAGAAACCAATCTTCCTGTAGGAACATCAGCACCAGACATACAACATGTAGGATTAACTGTTAACAGTTTAACAGAATCTGTTACTGTAGCTTCAAATTATTTTGCTTTAGGAGCAGACGAAATATACCTATCAAACTACAATAAAAAAGGAGACCTTGTTTGGAGAAGAAGTATTGATAAAGGGTCTTCTGTATTATCAAATCCTTCTCTCGATAATGAGGGAGCATTTATTTATTTTCTATTCGATGCTGGATCTAACACTGATGCCACATACACTTATGGCAAACTAAGCTCCACTGGTAATGGTCTTGGAGACTTTGAATATAATGATGGGACGGCAACCTTAATTGATTATCAATACGTAGGCACTGGTTCTTTGGCATCCGATGTCATCGGTAAAATATCTGACGGTTCTGTAAGAAACGACAGCAGCGATCTCATCACCTATCCATTCAACGCTAACAAACTACTCTTTGATGACCTTGCTACTCAGATATCTAACAAGAAGAGACAGATGGATGATGCTGATAGCTTTGAGTATAGTGGTAGTCCTGCTATTAGACCTGCTGACTTCCAAGAGTTGAACCTGCTTGGTGATAATGTTAGTGGTAGAACTTGGACTGATACTTCAGGCAAAGGTAATGATGGATTGGCATTTGTGAATGAACCTTTCTTTGGTGCTGGCGGCACAACTTTTGATGGTAGTAGCGGATACTTTACTATGCCAGATTCAGAAGATTTTAATATTGGTTCTTCTGATTTTACAATTGAATTGTGGTTGTATAAAAAGAATACTTCAACTTATCAGCACGTTTTTAGGCAACGTGATAGTGGAAGTGCCGAAATGGCAATTGTCCTTGATATTGATTCAACTGGCGGCGATAGTTTTGCTTCTGGATATTTCCAAATGGAGTGGGGAGCAAATAAAAGATTTGTTGGTGTTAATGCTGGACTAACTAATGATACGTGGCATCATCTTGCTTTAACAAAAGAAGGAACAACTGGTAGAGTTTTTGTAGATGGTGTGTTGGTGGGAACAGATACTTTAGAGAATGTTGGTAATTATTCTGGAGATTTTTATGTAGGATATTGGGTTGGTGGATTGGGTTATTATTTTGATGGTTATATGTCCGACTTTAGAATTGTGAAAGGAACGGCACTCTACACATCAAACTTTACTCCACCAACTACACAACTAACTAATATTCCTGGCACAGTTCTTCTGACATGTCAAGGTGACAGTATTGTTGATGCTAGCCCGAGCTCCCACCCAATCACGATAACTGGTAGTGTCACTCCTACTGATGGCGGACCCACCCACAACGCCGCTGGATACTGGGAGTTTGACGGGGTGGATGATGAAATTACTATTCCATATACACCAAACTTAGCATTTACTGATGCTATTATGTCGTGTGAATCTTGGGTATATGTTGATAGTTTATCATCTGCTTTTTCTATTATTAATAAAAGGGGAAACAGATTCACTCAAAATAATAATAGACCATATGTTTTTGAAGTTAATAATGATGGTAGAGTGAGATGGATTCTTGATGATGCTACTACCGTATGTGATACAGCAACTGGACTAATACAGACAGGTCAGTGGTATCATCTGGCAGCAACTCACGATGGAACTAATGCTAAAATCTATATTAATGGAGTTCAAAGTGTTAGTGTTTCCAGTGGCACATCTTCTTTAGATGATACTGGAGATATTCCAGTTAGGATTGGGTGGCGTTATCAAAATAGTTCAATTAATTATAGTGATGGCAGAATTGGAGAGATTCGTATCTATCCAAGAGCTCTAACAGCAGCACAAGTATTCCAAAACTACAACGCCACCAAGAGTAAGTATATCAACGAAGCACCTGACACAGCACCTAAGATTTCTGATAGTGCTATTGTATATGATAGCAACTTGCTATTGAACTATGACTTTGGAAACAGCGCATGTTTTGATTTCAAACATAACTATATCAATTACAACACAAAACAATTACCAATAACAGGGGTTGAGGATATTAGTAGCACAATTGATGGATACACCGTAACTCGTGGTGGTATTATTTCCAATACTGAAGTAGCACCAGATGGTTCTAGAACTGCTGTTCTTTTTAGAGAATCAGATGGAATTGAAGGATCTGCCAGAATTTTTACTGCTGGATGGAGACAACCTGATTTTGACGGTCAAGTTCATTACTTCTCCGCCTATGTCAAAAAAGCAGAAAGTAGATATGTCTATGTTGCCATGTATCAATCTGATGATGGTGCTGATTATGATGGCGTCAAATTCGATTTTGACACAGAAACTTTGATTGATGCTGACCCATCAGCAAATTGGGACAGAGGATTTACTAATGTTGGTAATGGATGGTATAGAATTTGGATTGGTTTTCCAATCAACATTGGAGTTTCCATCTATGTTACGGTCGGAGCAGATGATAATGGAAGTGCAGAAGGTCTAACATCAAATTTAGTTACCAGAAATATTGATTCATTCTACACTTGGGGATGGCAGGTAACAAAAAATGCTTTGACTAATACTTATGTCAGTGCTGGAACAACATATTCAAGCGGAAAACTTGACCCACCAACCACAGTAAAGAACCTCTCAAGTTCTTCTTATACTGGCAATATCGTTGGAGCTACTTTCAATCCTGCTGGGTATTTTGAGTTTACACCAGAAGCAGACCACATCCAATTGGGAGCAACAAATCAATTTGCTGGCACTAATATTAGTGTAGAGGTTTGGGTGTATCCAACAACAGGTCAAACTGGCAATTACATCTGGGGTAATTATGATGGTGGTGGATATGTTGATGGTGATTTTATGTTGAGATTTGATCCATCTGGAAGTAGTGCTGAGAGAAGACCACTATTACAAATTGGCACAGGAAGTAACATAGGATCCCAGTTTGTTTCTACCACACAATACGATTATGATAATTGGTATCATATTGTTTGTACTTGGGACGGGACAACTGGACTGATTTATATTAATGGATCTAACCAGGCAACTACGAGAAACGATGGCGGAACAGGAGCATCTGGAACAGCAGCAAATAATACATCCCCATTTTATATTGGCACAGGGTCTCCCTTGAATGATAGTGTTGCTGGAAATTACGGACAATTTAGAATTTACAACAGAACACTAAGCGCCACAGAAGTATCCCAAAACTTCAACGCCACTCGTAGTAAGTATGGTGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0f3ad8dcc9c73e9e41402c55ef408841ae1ebdc8a3276b82c624b0d6f2fdbbd6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7502
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomic content and context of auxiliary metabolic genes in marine cyanophages Marston,M.F., Martiny,J.B.H. and Crummett,L.T. 2016-12 — GenBank