Protein

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Genbank accession
YP_004322938.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNIVVNEIHGQDYYNYIIRGDAGMNLLVAGTQSVHPSGQAGFALPKGTTAQRPSSPSAGMIRYNTDNLAVEYYTGSQWRSSGGGTGGTSSNPFTSLAQADAAGVADGLYYFTNGSETKQVYVGNFSGTRFLMITSNNASSGTIPSGNNRRSTSYYVNRSGAGGSTLGTPSPDSDYIIGSWINSFNFSQIKVYGFGRGTTNGSTTWGGNRGTTVEATWNTNSFTSVTPRNQVSVIGELSGSAAYFVGDGIRRDNENGGFNANPNQTTVGGVGVINSSGDPANGCYLGHGSNEGNYEGWYNNSGNANSQGYTTWVR
Physico‐chemical
properties
protein length:315 AA
molecular weight: 33058,17720 Da
isoelectric point:6,28556
aromaticity:0,11111
hydropathy:-0,52349

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004322938.1
1 315
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,1577
Central domain 151 304 155 0,1210
C-terminal 305 315 10 0,9689
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-304
C-terminal
305-315

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SM1
[NCBI] 		444859 Uroviricota > Caudoviricetes > Pantevenvirales > Thetisvirus > Thetisvirus ssm1
Host Synechococcus sp. WH 6501
[NCBI] 		166310 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004322938.1 [NCBI]
Genbank nucleotide accession
NC_015282 [NCBI]
CDS location
range 30574 -> 31521
strand +
CDS
ATGAGTAATATCGTAGTAAACGAAATACACGGACAAGATTACTACAACTACATCATTAGAGGTGATGCAGGGATGAATCTACTTGTCGCAGGAACTCAAAGTGTTCATCCTAGTGGTCAGGCAGGTTTTGCTTTACCTAAAGGGACAACTGCACAACGTCCTAGTTCACCTAGTGCTGGGATGATTAGATATAATACCGATAATCTAGCAGTAGAATATTATACAGGATCACAATGGAGATCTAGTGGTGGTGGAACAGGTGGAACATCATCTAATCCATTTACAAGTCTGGCACAAGCAGATGCTGCTGGTGTCGCTGATGGATTATATTATTTCACTAATGGATCTGAAACAAAACAAGTTTACGTTGGTAACTTCTCAGGAACACGTTTCTTGATGATTACTTCTAACAATGCAAGTAGTGGAACAATTCCTAGCGGTAATAATAGAAGAAGCACAAGTTATTATGTAAACCGTTCTGGTGCTGGTGGTTCTACATTAGGAACTCCAAGTCCCGATAGTGATTATATTATTGGTAGTTGGATTAACAGTTTTAATTTCTCTCAAATCAAAGTATATGGTTTCGGTAGAGGAACAACTAATGGATCTACTACTTGGGGTGGTAACAGAGGAACAACTGTTGAAGCAACTTGGAATACTAATTCATTCACGAGTGTAACACCTAGAAATCAGGTTTCTGTTATTGGAGAACTTAGTGGTAGTGCTGCATATTTTGTTGGTGATGGTATTCGTAGAGATAATGAAAATGGTGGATTCAATGCTAACCCTAACCAAACAACTGTTGGTGGTGTTGGTGTAATAAACTCTAGTGGTGATCCAGCAAATGGTTGTTACTTAGGTCATGGTTCTAACGAGGGTAACTATGAAGGATGGTATAATAATAGCGGTAACGCAAACTCTCAAGGTTATACCACCTGGGTAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9aefdc6b8041cf22f13821b7f5cd16e6d4ad22b425e2370c2da7b68b248d3b3f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5326
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 6501-1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank