Protein

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Genbank accession
YP_009126188.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MEKMMASFGNGYTKTQVISENNSIKYKISFAAGSVFSTPSSAYFTFQDNPIGDQQDGAGINIRVFNPALNTVSAKKTFLLTPNDNDPGNRAFIEYLSTFTQDNTNLLIFTTSGDIKTSNLVENKFKSIYSTMWPNKWMTSRYSCTYCGLFSIKNNKIIAENVTYSDGVLRDEDIRPALEFVYDKADDIGATGFSYRAVEDFEEYTSSAATIKRYPVDSASGVEISSIGISPGDILFWSFEFLHGDNIPPEVPGTNNNKIRIEIRWLNSSGGWIKSVNVDSNHANAGKWIQHEQTVEVPADAARIVILASKTSPTDTVGTGGVRSMILTETSRATEALTSPSAISVNGIRLNTIVSGDNPALLILPANEVDSTGKPLPGEDVSGIIYSSDWREFEKNI
Physico‐chemical
properties
protein length:397 AA
molecular weight: 43502,02790 Da
isoelectric point:4,87220
aromaticity:0,09824
hydropathy:-0,27607

Domains

Domains [InterPro]
DC_0912
STR
1–397
DC_0912
PS52031
LEC
22–197
PS52031
YP_009126188.1
1 397
Architecture
STR
STR 1-397
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009126188.1
1 397
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,3622
Central domain 141 386 247 0,5891
C-terminal 387 397 10 0,2310
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-386
C-terminal
387-397

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STP4-a
[NCBI] 		1445860 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009126188.1 [NCBI]
Genbank nucleotide accession
NC_026607 [NCBI]
CDS location
range 146912 -> 148105
strand +
CDS
ATGGAAAAAATGATGGCGAGTTTTGGTAACGGATATACCAAAACTCAAGTTATTTCTGAAAATAATTCCATCAAATACAAAATTTCATTTGCTGCGGGGTCGGTTTTTTCGACCCCTTCTTCTGCTTATTTTACCTTTCAGGATAATCCAATAGGTGACCAGCAAGATGGTGCTGGTATAAATATCAGAGTTTTTAATCCAGCGTTGAATACTGTATCTGCTAAGAAAACATTTTTATTGACACCCAATGATAATGACCCAGGCAATAGAGCATTCATTGAATATTTGTCAACATTTACTCAAGATAATACTAACTTGTTAATATTCACCACATCAGGTGATATTAAAACGAGCAATTTAGTAGAGAATAAATTTAAGTCCATTTATTCAACTATGTGGCCAAATAAATGGATGACATCTCGGTATTCATGTACTTATTGTGGGTTATTTTCAATAAAAAATAATAAAATTATTGCCGAAAACGTAACATATTCTGATGGAGTTCTTCGGGACGAAGACATCAGACCTGCTTTAGAATTCGTTTATGATAAAGCTGACGATATTGGAGCTACCGGGTTTTCTTATAGAGCTGTTGAAGATTTTGAAGAATACACTAGTTCCGCGGCAACAATAAAAAGATATCCAGTTGATTCTGCTTCGGGCGTAGAAATTAGCTCAATTGGAATATCTCCTGGTGATATTCTGTTCTGGTCATTTGAATTTTTGCATGGAGATAATATTCCGCCGGAAGTTCCAGGGACAAATAATAATAAAATAAGAATAGAAATAAGATGGTTAAATTCATCTGGAGGGTGGATTAAATCAGTTAATGTTGACTCTAACCACGCAAATGCTGGAAAATGGATACAGCATGAACAAACTGTTGAAGTCCCTGCTGACGCTGCCCGGATAGTTATTCTTGCTTCTAAAACGTCTCCAACTGATACGGTCGGTACTGGAGGTGTTCGTAGTATGATTTTAACTGAAACTTCGCGAGCTACTGAGGCATTAACTTCTCCATCTGCGATATCAGTTAATGGTATTCGTTTGAATACTATAGTTTCAGGAGATAACCCGGCACTTCTTATTTTACCCGCTAATGAAGTTGATTCAACTGGCAAACCATTACCAGGTGAAGATGTTTCAGGAATAATTTACAGTTCTGATTGGAGAGAGTTTGAGAAAAATATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f8e1de49110a15c1610f94b25fb58ccf7b2b6faebecbaf43c2983a975e4dbb1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6684
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of STP4-a, a novel T4 virulent phage infecting Salmonella Li,M., Wang,J., Lin,H. and Han,F. 2015-11-13 — GenBank