Protein

View in Explore
Genbank accession
QJT70106.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,51
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSKEELPSIDDYIVDPESLPSVEDYITEEVNTELPSVEDYIEIEEAVQTIEDAEGNTFAEVEDIIPAFPELIRLINDVRKDIPDIPEIKYYDKELESLTEQINQVREEIPEVPEVRYYESEIEAICEQIDLVKQVIEKNAADIPEIKYYDDQINVLEERLAQVNQNIEQLPEPKYYEEDIQSIRIAIQEVQDQIPTFPKWVNEVNEVPDFSWIGKTFSVIDDDFVKVHDAVEGLRGKVEYDLDRIEEHFDKKEFETRTDFNELRESINTRFDTEKEKIWKEIKETSMRMWGHHKEFKDDDRKLKKQILGEYNTLKQTLKKDLKEVNKESVKTDELLLGYFNDLKKEISELPEVKYYDEQIDEVRDEFNDGLKSLKILVEEIKGKQEVLKEEINNRPIQPDPSESNIDPLTPTDQNFATHEDLAKHYKLFINRVQQQLYTIGGGGAGFIKDLDDVSFDSGIGTNKLLIYNGSSWVGIASTAIGNIGIQSGGSIITDGVKTLNFIGVGNTFAVNGTTVDISISGGAGAGGTWGSNSVGVHTDRIVGINTSSAKSGVSLYVIGDAEFTGNVNIAGTLTKEDVTNVDSIGDVIVGGGLSVAGFSTFNNNVNINANISHTGTATLGSSNGIGTVHIGIGTTALLVDGDARVTGILTVGRSSVTIDGVNNRILIGDEDVTISNSSITIGDNVTINATASGINSAPNVLYVAKDGNDSNNGTSIDNAKLTIKSAVSIAQSGTVIKVLSGNYVEANPITLPAFTAVVGDDLRTVKVLPNTTTSDIFHVNKGCKLANMTFSGHVAPAAAVAFPTGIATNVGGGKWKGPYIQNCTSDTTTGTGIYIDGNLAVKTKSMNVDAFTQYNQGGVGVAVTNEGYAQLVSVFTICCDKAITVHKGAQADLANSNCSFGTLGLVADGVSPEQFTGIVTSSAAAAQDNVTINVGAVTTRPYDGQVVYFDQLYKSVETISVGSGGTGYTQAPTVTIDAPTGPSGETASAFASIENGSVTEISIISSGSQYTGTPTITISGPQSGINTATATANMADTYYTINSATPIVSGITTLTLAENLINTVGVGSTAYFFQQSKIVASSHTFEYIGSGNTITSATPKRGGVTIQANEVVSQNGGRVIYTSTDQAGNFRIGDDLQINQATGTISGRAFSKSLFSEITPFILALS
Physico‐chemical
properties
protein length:1167 AA
molecular weight: 125527,99830 Da
isoelectric point:4,47882
aromaticity:0,07027
hydropathy:-0,21037

Domains

Domains [InterPro]
DC_2217
STR
2–224
DC_2217 Coil DC_2218
Coil
Unmapped
88–108
Coil Coil Coil DC_0763
IPR011050
STR
699–901
IPR011050
QJT70106.1
1 1167
Architecture
STR
STR
STR 2-224 | STR 328-1167
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage SynMITS9220M01
[NCBI] 		2736186 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MIT S9220
[NCBI] 		166309 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJT70106.1 [NCBI]
Genbank nucleotide accession
MT408532.1 [NCBI]
CDS location
range 81468 -> 84971
strand +
CDS
ATGTCTAAAGAAGAGTTGCCTTCTATTGATGATTATATTGTAGATCCAGAAAGTCTACCGTCAGTTGAAGATTATATAACAGAAGAAGTAAATACAGAATTACCTTCTGTTGAAGATTATATTGAAATAGAAGAGGCAGTCCAAACCATAGAGGATGCTGAAGGAAATACTTTTGCAGAGGTAGAAGATATAATTCCAGCATTTCCAGAATTAATTCGTCTGATCAACGATGTCAGGAAGGACATCCCAGACATTCCAGAAATAAAGTATTACGATAAAGAATTAGAAAGTCTAACTGAGCAGATCAATCAGGTAAGAGAAGAGATACCTGAAGTTCCTGAAGTTAGATACTATGAATCAGAGATAGAGGCTATCTGTGAGCAGATTGATCTGGTAAAGCAGGTAATAGAAAAGAACGCTGCAGACATACCAGAAATAAAATATTATGATGATCAGATCAACGTATTGGAAGAACGTCTTGCTCAAGTAAATCAAAATATTGAGCAGCTGCCTGAACCAAAATATTACGAAGAAGATATTCAGTCTATTAGAATAGCGATTCAAGAAGTACAGGATCAAATTCCTACATTCCCTAAGTGGGTCAATGAGGTAAATGAAGTTCCTGACTTTTCATGGATTGGAAAGACTTTTAGTGTCATTGATGATGATTTCGTCAAAGTCCATGATGCTGTTGAAGGATTAAGAGGTAAGGTTGAATATGACCTCGATAGAATTGAAGAGCACTTTGATAAGAAAGAATTTGAAACCAGAACTGATTTCAATGAGTTAAGAGAAAGTATCAACACTAGGTTTGATACAGAGAAAGAGAAGATCTGGAAAGAGATCAAAGAGACCTCAATGCGTATGTGGGGTCATCACAAAGAATTTAAAGATGATGATAGAAAATTAAAGAAACAGATACTTGGAGAATATAATACTCTCAAGCAGACACTCAAAAAAGATCTTAAAGAAGTAAACAAGGAAAGTGTAAAGACAGATGAATTGCTTCTAGGATATTTTAATGATCTAAAGAAAGAAATTTCAGAGTTACCTGAGGTAAAATATTATGATGAACAAATTGATGAAGTAAGAGATGAATTTAATGATGGATTAAAATCTCTCAAAATTTTAGTTGAAGAAATAAAGGGGAAACAAGAAGTTTTAAAAGAGGAAATTAACAATCGTCCTATTCAACCTGATCCAAGTGAATCAAATATAGATCCACTTACTCCAACAGATCAAAACTTTGCCACTCATGAAGATTTGGCAAAGCATTACAAATTGTTTATCAATAGAGTTCAGCAGCAACTCTATACAATTGGCGGTGGTGGCGCTGGATTTATTAAGGATCTTGATGATGTAAGTTTTGATTCTGGTATTGGTACAAATAAACTATTAATTTACAATGGATCAAGTTGGGTTGGAATCGCTAGTACTGCCATTGGAAATATTGGAATTCAATCTGGTGGAAGCATAATCACAGATGGAGTAAAAACACTAAACTTTATTGGAGTTGGAAATACATTTGCCGTTAATGGAACAACTGTTGATATAAGCATCTCTGGTGGTGCTGGTGCTGGAGGAACATGGGGATCAAATTCAGTTGGTGTCCATACAGATAGAATTGTTGGTATTAATACTTCGTCAGCAAAGTCTGGAGTTTCTTTGTATGTTATTGGTGATGCAGAGTTTACTGGAAATGTTAATATTGCAGGAACATTAACCAAAGAAGATGTCACCAACGTAGACTCTATTGGTGATGTTATTGTTGGTGGTGGATTATCTGTAGCTGGGTTCTCTACATTTAACAATAATGTAAATATTAATGCAAACATTAGTCACACAGGAACCGCAACGCTTGGGTCATCAAATGGTATTGGAACGGTTCATATTGGAATAGGAACCACTGCTCTTTTGGTTGATGGTGATGCTAGAGTCACTGGAATTCTAACAGTTGGTAGATCTTCAGTTACTATTGATGGTGTTAATAACAGAATTTTAATCGGTGATGAAGATGTCACAATCTCCAATTCCAGCATTACTATTGGTGATAACGTAACAATTAATGCCACCGCCAGTGGTATCAACTCTGCACCAAATGTGCTATATGTTGCAAAAGATGGAAATGATTCAAATAATGGAACTTCTATTGATAATGCAAAACTTACGATTAAGAGTGCAGTTTCTATCGCCCAATCAGGTACAGTAATTAAAGTTCTTTCGGGTAACTACGTAGAGGCTAACCCAATTACCCTCCCAGCCTTTACTGCTGTTGTTGGTGATGATTTAAGAACTGTTAAAGTTCTTCCAAACACAACAACTAGTGATATTTTCCATGTGAATAAAGGATGTAAACTTGCAAACATGACTTTCTCTGGTCACGTTGCTCCTGCCGCTGCTGTTGCTTTCCCAACAGGAATAGCAACTAATGTTGGTGGTGGTAAATGGAAAGGTCCATATATTCAAAACTGCACTAGCGATACAACCACAGGAACGGGTATCTATATTGATGGTAACTTAGCAGTAAAAACTAAGTCTATGAACGTTGACGCATTCACTCAATATAACCAGGGTGGCGTTGGTGTTGCAGTTACTAACGAGGGATACGCTCAGTTAGTTTCTGTATTCACTATCTGCTGTGATAAAGCAATCACAGTTCATAAGGGTGCTCAGGCAGATCTGGCAAATAGTAACTGTAGTTTTGGAACTCTGGGATTAGTTGCTGATGGTGTCAGTCCCGAACAATTCACTGGGATTGTTACTTCCTCTGCTGCAGCTGCACAAGATAATGTAACCATTAACGTTGGTGCAGTGACAACTAGACCATATGATGGACAGGTTGTTTATTTTGATCAACTTTACAAGTCAGTTGAAACTATTAGCGTTGGTTCTGGTGGAACTGGATATACTCAAGCACCAACAGTAACAATTGACGCACCTACGGGCCCGAGTGGAGAAACTGCTTCTGCTTTTGCCAGCATTGAGAATGGTTCTGTTACTGAGATTTCTATTATTAGTAGTGGAAGTCAATATACAGGAACTCCCACTATTACGATATCTGGACCTCAGAGTGGTATTAATACAGCGACTGCCACAGCAAATATGGCAGATACCTATTATACAATAAATAGTGCTACACCCATCGTTTCTGGAATTACAACATTAACACTTGCAGAAAATCTTATTAATACTGTAGGAGTTGGTTCTACTGCTTACTTCTTCCAACAAAGTAAGATTGTTGCAAGTTCTCATACGTTTGAATATATTGGTTCAGGTAATACAATTACATCAGCAACACCAAAACGAGGTGGAGTTACAATTCAAGCAAATGAAGTTGTAAGTCAAAATGGTGGAAGAGTAATATATACCAGCACAGACCAAGCAGGTAACTTTAGAATTGGTGATGATCTTCAGATTAACCAAGCAACAGGAACTATTAGTGGAAGAGCATTTTCCAAGAGTTTGTTCTCAGAAATAACACCCTTTATCTTAGCACTCAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b3fcb5b9bf58b81f88318bf81e67f956be6a9e1b47a94f2678cd110f3e93c25b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3522
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Synechococcus sp. MIT S9220 and co-cultured Thalassospira bacterium and cyanophage Ahlgren,N.A. and Belisle,B.S. 2020-07-23 — GenBank