Protein

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Genbank accession
YP_007237480.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MNSQFSQPKGSVSKETNKDSIARKFGCKKSEVLYAKAGVSLSGYKVIYDKNTERSYALPSDLPSDSVFISLTNAILTHNGGTVDLGALAVLRGEFVTVGGTFTVGGTLGVKNELLTHDDGKYRWGGTFPKIVPLGSSPEASGGISPTTWIKIYDPSLRENLFSSAGAGVIGSADGNVQNDLSTLKISTTKLNNHADLVIDDYLFSGETTYDNAIQRVLTESLSSGRPIKFLPHVYNFSSPVTLNMDAPGIKIYGAGVSRTELRFPNAAAGVTQLIIKSTADWYDFVWEGMSVRSSHAGILCQIGNTNFVDPLNVARLEDLAFLNSSSIGDNNVVALSLEYGVQCSLINVRANCYATGTGVNVGRALVVRQVGFTTYVSCSFGNASYGVSFLDGVSFTNNFIGCDFENINIALYNGVPTSGGHTFIGCQFSLWTQFLAQAPVGSTNRFLIINPNVSQVDGLVDPNNAVGVKFQNDQLDITTPGLPASGSSVTNTTGRVVVVTIGGGTVSAILRNGGTLGITNGTVILLPMDTITLVYSAGPSWSWYKLG
Physico‐chemical
properties
protein length:548 AA
molecular weight: 58091,77970 Da
isoelectric point:5,90969
aromaticity:0,09124
hydropathy:0,06880

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 IPR040775
DC_0071
STR
1–544
DC_0071
G3DSA:2.10.10.80
ATT
94–163
G3DSA:2.10.10.80
YP_007237480.1
1 548
Architecture
ATT
STR
ATT 1-163 | STR 164-544 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007237480.1
1 548
Domain Start End Length (AA) Confidence
N-terminal 1 211 211 0,9949
Central domain 212 466 256 0,9734
C-terminal 467 548 81 0,9781
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-211
Central
212-466
C-terminal
467-548

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB-DsoM-LIMEstone1
[NCBI] 		2678590 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Limestonevirus
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007237480.1 [NCBI]
Genbank nucleotide accession
NC_019925.1 [NCBI]
CDS location
range 119374 -> 121020
strand -
CDS
ATGAACTCGCAATTCTCACAGCCGAAAGGTTCTGTTTCAAAAGAGACTAACAAGGATTCCATCGCCCGCAAATTCGGGTGTAAGAAGTCTGAGGTATTGTATGCCAAAGCGGGCGTATCTTTATCTGGGTATAAAGTAATCTACGATAAGAACACAGAGCGTTCTTATGCTTTACCTTCCGACTTACCTTCCGACTCCGTCTTCATCTCCTTAACAAATGCCATTCTCACTCATAATGGGGGGACTGTCGATTTGGGGGCACTGGCTGTTTTGCGTGGTGAATTTGTCACAGTTGGTGGCACATTCACAGTTGGTGGCACACTTGGCGTAAAAAATGAATTACTCACCCACGATGATGGTAAATATCGATGGGGTGGCACATTCCCTAAAATTGTACCTCTTGGTTCTTCACCAGAGGCAAGTGGTGGTATTTCTCCTACCACTTGGATAAAAATTTATGATCCTTCTTTGAGAGAAAATTTGTTCAGTTCGGCAGGCGCTGGTGTTATCGGTTCAGCGGATGGAAACGTGCAAAATGATTTATCTACTCTTAAAATAAGCACCACAAAACTTAATAACCACGCCGATCTCGTTATAGACGATTATTTATTTTCTGGAGAAACAACTTATGACAATGCAATACAACGTGTGTTAACCGAGTCATTATCAAGTGGTCGTCCAATAAAATTTCTTCCCCATGTGTATAACTTCTCCAGCCCCGTTACATTAAACATGGATGCGCCTGGTATAAAAATATATGGTGCGGGCGTGAGCAGAACAGAGTTGAGGTTTCCTAACGCAGCTGCAGGTGTTACTCAATTAATTATCAAGTCGACCGCAGATTGGTATGATTTTGTTTGGGAAGGGATGAGTGTTCGTTCATCACACGCTGGGATCTTGTGTCAAATCGGGAACACTAATTTTGTGGATCCTTTGAATGTGGCACGCCTTGAGGATTTGGCGTTTCTAAACAGCAGCAGCATTGGTGATAACAATGTTGTGGCCCTGAGTTTAGAATACGGTGTCCAATGCTCGTTAATTAATGTGCGCGCCAATTGTTATGCAACCGGTACTGGTGTTAATGTGGGGCGTGCGCTTGTTGTTCGACAAGTTGGGTTTACAACCTATGTGTCTTGTAGTTTTGGAAATGCGAGCTATGGCGTGTCATTCCTTGATGGCGTGTCATTCACGAATAATTTTATCGGTTGCGATTTTGAAAATATTAACATCGCATTGTATAACGGAGTGCCGACTTCTGGCGGACATACATTTATCGGTTGTCAGTTCAGTTTGTGGACACAATTTTTGGCTCAAGCGCCAGTTGGCTCAACAAACCGGTTCTTGATAATCAATCCAAATGTTTCTCAGGTCGATGGGTTGGTAGATCCCAATAATGCAGTGGGTGTAAAATTCCAGAATGATCAATTGGATATCACCACACCAGGATTACCTGCATCCGGGTCTTCAGTCACAAACACGACGGGGCGTGTTGTTGTCGTTACAATTGGGGGTGGCACTGTTAGTGCTATTCTCAGAAATGGGGGTACTCTCGGTATAACAAACGGCACCGTAATATTACTCCCAATGGACACCATAACACTCGTGTATAGCGCTGGTCCTAGTTGGTCCTGGTACAAATTGGGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d49676aec1c52ad57da29a42eb774a403f82fc78f218c8e2b20ccc4cc0ec83cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8453
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50