Protein

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Genbank accession
YP_009794284.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MTMLKLSQIETTANDEGKSAVGKDGQFSFESSDALTMTQLASVKFDSKNGVLVFIKQNGEVINVAGLPTVAMFGEGKAGKRGTPGSTGRDGRDGRDGETGKDGCEGEPGSKGQTGTVGDAGRDGNTGPDGDTGPVGPDGPTGPIGPDGPTGPIGPRGNTGPDCVRGATGAQGPAPLTVAVQSNTQPTDGRVFAWLYPTANVTPAPPLPIITPLAASVSSLYMVGTRTVQGSDLFTALAYLPVNARGGVGPYKYNWTITTTEGVTIQDTETSTCVVNFYLRLGLGADRTIKGTITCVVTDMGQTSRPTATVRSALTVVARNPVNTSTTGCIVFGSTVDTVIGPVDVKDLSVGDSILAHSNQPKDFRGWSVTAMKGKTVYASVLALRYGREDHYYVINGQKFTHEHPVLVYDTTWRYVPARDVLLGQTVLGRKGPISVSECYRVDKAVDTVDIDVEPFDCYFVGDVLVHNTDIVAKAEKL
Physico‐chemical
properties
protein length:478 AA
molecular weight: 50102,67670 Da
isoelectric point:5,39473
aromaticity:0,06485
hydropathy:-0,21632

Domains

Domains [InterPro]
DC_0479
ATT
1–75
DC_0479 PTHR24637 DC_0444 G3DSA:2.170.16.10
IPR008160
STR
76–131
IPR008160 G3DSA:2.170.16.10
IPR036844
STR
328–468
IPR036844
cd00081
RBD
329–468
cd00081
YP_009794284.1
1 478
Architecture
ATT
STR
STR
ATT 1-75 | STR 76-131 | STR 175-468 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009794284.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 352 352 0,8826
Central domain 353 467 116 0,2290
C-terminal 468 478 10 0,9927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-352
Central
353-467
C-terminal
468-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage vB_EamM_Y3
[NCBI] 		1983553 Uroviricota > Caudoviricetes > Sasquatchvirus >
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009794284.1 [NCBI]
Genbank nucleotide accession
NC_047880 [NCBI]
CDS location
range 73555 -> 74991
strand -
CDS
ATGACAATGTTAAAACTCTCGCAAATCGAAACTACTGCCAACGATGAAGGCAAAAGTGCGGTAGGCAAGGATGGTCAATTCTCTTTTGAATCGTCCGATGCGTTGACAATGACGCAACTTGCCAGCGTGAAGTTTGACAGTAAGAACGGTGTACTCGTATTCATCAAGCAGAATGGCGAAGTGATTAATGTCGCCGGACTGCCGACTGTTGCGATGTTTGGTGAAGGGAAGGCTGGCAAGAGAGGCACTCCCGGATCCACGGGTCGTGATGGTCGTGATGGTCGTGATGGTGAAACTGGTAAAGATGGTTGTGAAGGTGAGCCTGGGTCTAAAGGCCAAACAGGTACTGTAGGTGATGCTGGTCGAGACGGCAATACTGGCCCCGATGGCGATACAGGACCTGTTGGTCCAGACGGTCCTACGGGGCCAATTGGTCCAGACGGTCCTACAGGTCCTATCGGGCCTCGTGGAAATACAGGTCCCGACTGTGTGCGTGGCGCTACTGGTGCTCAAGGCCCAGCGCCTCTGACTGTTGCAGTGCAATCGAATACTCAGCCTACTGATGGTCGTGTGTTCGCTTGGTTATACCCTACTGCTAACGTTACGCCAGCGCCACCTCTCCCAATCATAACACCGCTTGCTGCATCTGTGTCTAGTCTCTATATGGTAGGTACACGTACTGTTCAAGGCTCTGATTTATTCACAGCTCTTGCGTATCTGCCTGTCAATGCTCGTGGTGGTGTCGGTCCTTATAAGTATAATTGGACTATCACTACTACAGAAGGCGTGACGATTCAAGACACTGAAACTTCCACCTGCGTCGTTAACTTTTATCTGCGTCTCGGTCTCGGTGCTGATAGAACAATCAAAGGCACTATCACCTGCGTAGTTACAGACATGGGACAAACGTCTCGACCGACAGCTACAGTTCGTTCTGCGCTGACCGTTGTTGCACGTAACCCTGTCAACACTTCTACTACAGGCTGTATTGTATTCGGCTCAACTGTCGATACTGTCATCGGTCCTGTTGATGTGAAAGACCTGTCTGTTGGCGATAGCATTCTCGCACACTCTAATCAGCCTAAAGATTTCAGAGGCTGGTCTGTTACTGCGATGAAAGGCAAAACAGTTTATGCGTCTGTGCTTGCATTACGTTATGGTCGTGAAGATCATTACTATGTGATTAACGGACAGAAATTTACGCATGAGCATCCAGTCCTTGTGTATGATACGACATGGCGTTATGTGCCTGCGCGTGATGTACTGCTTGGTCAAACTGTTCTCGGGCGCAAAGGACCTATCTCAGTATCAGAGTGCTATCGTGTAGACAAAGCTGTCGATACAGTAGACATTGATGTTGAGCCTTTCGATTGCTATTTCGTTGGTGATGTACTCGTGCATAATACGGATATCGTTGCTAAAGCGGAGAAACTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c379c59d5c1b05c64faab504c214380599ca8fbf937daaa64bf60f9379519cdc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7006
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50