Protein

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Genbank accession
AKF13371.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPSLVTEKARVMTAVRMRDSFQSNNLLNHYMVAAKHVPFDDDNNPPMPVNSDDFQYYDMARDIIFGKKITPDDVATAIKNYTWQSGTIYTAYDDKDGDLYKKKFYAITKEGAEYSVFKCLYNNKGKPSTFQPKKSETNIADELYLTNDGYIWKLLYSVSENQYKKFAIGQDVFPCFANPDATENAVDGAIHAIITEFGGSGYNTYANGSFRTIAVNGNNLIHAIQSDGVLSANTDYYKSCAIHINAGTGAGQLRQIEEYIVTGSDRRILLKNAFTVDPDFSSKFAIAPFVQIEGDGQGAEAVVTINATSNAIHSVQMVRLGEGYTVANATIIANPSTLSANSATVRAILSPQGGHGYDVEKELFASRMVISSQFDGNEGGVFSTDNDYRITAVMVDPVFANTVVTVADITGFTAEQKVTQNNGMSATISAVNLDGANTIRLKNIKGIVEVGETIVASNTSNSSIASADVTLVDRDLTKFDNRSVYSVEAVTPLSEFVIDEKIVQSSTGAYGYLHSVSGNTMFLTGVVGTFSVSDFTVGFEAEFVGESSDAVAKITGFNRPSLVKTAGECIYIQTTTPVERADDQAERLKVLIEF
Physico‐chemical
properties
protein length:594 AA
molecular weight: 64522,29520 Da
isoelectric point:4,82560
aromaticity:0,09764
hydropathy:-0,15976

Domains

Domains [InterPro]
IPR036327
STR
1–247
IPR036327 IPR036327
G3DSA:2.60.340.10
RBD
5–154
G3DSA:2.60.340.10 G3DSA:2.60.340.10
G3DSA:2.60.340.10
RBD
540–594
G3DSA:2.60.340.10
AKF13371.1
1 594
Architecture
STR
STR
STR 1-247 | STR 505-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AKF13371.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 178 178 0,8168
Central domain 179 409 232 0,4365
C-terminal 410 594 184 0,5551
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-178
Central
179-409
C-terminal
410-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage phiN3
[NCBI] 		1647405 Uroviricota > Caudoviricetes > Emdodecavirus >
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKF13371.1 [NCBI]
Genbank nucleotide accession
KR052482 [NCBI]
CDS location
range 61176 -> 62960
strand -
CDS
ATGCCGTCTCTGGTCACTGAAAAAGCAAGGGTAATGACTGCCGTTCGCATGCGCGATTCGTTTCAGTCAAACAACCTCTTGAACCATTACATGGTTGCTGCGAAGCACGTTCCGTTTGATGACGACAACAACCCGCCGATGCCGGTGAACTCGGATGATTTCCAGTATTACGACATGGCGCGGGACATTATCTTTGGTAAGAAGATCACTCCCGATGACGTCGCCACGGCAATCAAGAACTATACGTGGCAAAGCGGCACTATCTATACTGCTTATGACGACAAGGACGGCGATCTTTACAAGAAGAAATTCTACGCTATCACCAAGGAAGGTGCTGAATACTCTGTTTTCAAATGTCTTTACAACAACAAAGGCAAGCCTTCTACGTTTCAGCCGAAGAAGTCTGAAACCAATATTGCCGATGAACTCTATCTGACAAACGATGGATACATTTGGAAGCTGTTATATTCGGTTTCCGAAAACCAGTATAAGAAGTTTGCCATCGGGCAGGATGTGTTCCCGTGCTTTGCGAATCCAGACGCAACCGAGAATGCCGTTGATGGTGCGATCCATGCCATTATTACGGAATTTGGCGGTTCCGGTTATAACACCTATGCGAACGGCTCCTTCCGGACGATTGCGGTCAATGGCAACAACTTGATCCACGCCATTCAGAGTGATGGGGTTCTGTCCGCCAACACCGACTATTACAAGAGTTGTGCGATCCACATCAATGCCGGGACGGGCGCGGGACAGCTTCGCCAGATTGAAGAATACATCGTCACCGGTTCTGATCGCCGGATTCTTCTGAAGAACGCCTTTACTGTCGATCCGGACTTCTCTTCTAAATTCGCCATCGCTCCTTTCGTTCAAATCGAAGGTGATGGGCAAGGCGCTGAAGCTGTTGTCACGATCAATGCCACTTCAAACGCAATCCATTCGGTTCAGATGGTTCGTCTCGGTGAAGGCTACACGGTCGCCAATGCAACGATCATTGCCAACCCCTCGACCCTGTCGGCAAACAGCGCCACGGTTCGGGCGATCCTGTCCCCGCAAGGTGGACATGGCTATGACGTCGAAAAGGAATTGTTCGCCTCGCGTATGGTGATTTCGTCTCAGTTCGACGGAAACGAAGGCGGCGTATTCTCGACCGACAACGATTATCGAATCACTGCGGTTATGGTCGATCCGGTTTTCGCCAACACGGTTGTCACGGTTGCTGACATCACCGGCTTCACGGCTGAACAGAAGGTCACGCAAAACAACGGCATGTCCGCCACGATTTCGGCGGTCAATCTCGACGGGGCAAACACAATCCGCCTGAAGAACATCAAGGGCATTGTGGAAGTCGGCGAAACCATTGTCGCTTCGAACACATCGAATTCATCTATCGCATCGGCAGATGTGACACTGGTGGATCGCGATTTGACGAAGTTCGACAATCGCTCTGTTTACTCGGTTGAAGCGGTCACGCCTCTCAGCGAATTCGTCATTGATGAAAAGATCGTTCAGTCTTCTACCGGTGCCTACGGGTATCTCCATTCGGTTTCCGGCAACACGATGTTCTTGACTGGTGTGGTTGGAACCTTTTCGGTCTCTGATTTTACCGTTGGTTTTGAAGCGGAATTCGTCGGTGAGTCGTCGGACGCTGTCGCAAAAATTACCGGCTTTAATCGACCGTCTTTGGTGAAAACCGCTGGCGAATGCATCTATATACAAACAACGACCCCTGTTGAAAGGGCAGATGACCAAGCCGAAAGGTTGAAGGTACTAATCGAATTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8b08db8c9bbbd87c10e7ca9edfccdc97bea54eba02fa57df35e7d195b98c453e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6837
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50