Protein

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Genbank accession
AFI55345.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,79
Protein sequence
MLIGKVGRFVLLPPFTFYSTTGLTGEIVGVNYIQHLVSKGTNVKSLVYSPVSGDSLYTSDLASNVIIVTIKDASGKKYNIPDKYIENLYDDSLNYIDAYVTVKIGSLPRNYDYSYIKNQLATEVTKLSGVTVTSNDVYVSAQGSGQILSNDEASLLDIARNANIANLNTDYGKYLDAAKENTVLKSKLDSLEKGMFDLIG
Physico‐chemical
properties
protein length:200 AA
molecular weight: 21821,42440 Da
isoelectric point:5,14634
aromaticity:0,09500
hydropathy:-0,06500

Domains

Domains [InterPro]
IPR055618
STR
3–195
IPR055618
AFI55345.1
1 200
Architecture
STR
STR 3-195 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Halocynthia phage JM-2012
[NCBI] 		1173297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halocynthia roretzi
[NCBI] 		7729 Eukaryota > Metazoa > Chordata > Tunicata > Ascidiacea > Stolidobranchia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFI55345.1 [NCBI]
Genbank nucleotide accession
JQ340088 [NCBI]
CDS location
range 62776 -> 63378
strand +
CDS
ATGTTAATTGGTAAGGTAGGTAGATTCGTACTTTTACCACCATTTACATTCTATAGTACCACCGGTCTAACTGGTGAAATAGTTGGTGTGAACTACATTCAACATTTAGTTAGTAAAGGAACTAATGTAAAGTCTTTAGTTTATTCACCTGTAAGTGGTGATTCGTTATATACTAGTGATTTAGCTAGTAATGTAATCATCGTTACTATTAAGGATGCTTCTGGTAAGAAGTACAATATACCAGATAAGTATATAGAAAACCTATACGACGATTCCTTAAATTACATTGATGCTTATGTAACCGTTAAGATTGGCTCATTACCTCGTAATTACGATTACAGTTATATTAAAAATCAATTAGCTACAGAAGTAACTAAGCTGTCTGGTGTAACTGTAACAAGTAACGATGTTTATGTTTCTGCTCAAGGTTCCGGTCAGATACTAAGTAACGATGAAGCGTCTCTTTTAGATATAGCTAGAAACGCTAACATTGCTAATTTAAATACAGACTACGGTAAGTATTTAGATGCGGCTAAGGAGAATACAGTTTTAAAATCTAAATTAGATTCTCTTGAGAAAGGTATGTTTGATTTAATTGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
edb6857d2054f7eafc9960aa23efd0c3b116165c6dea1b78f97f4858b8f03020
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3624
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage from diseased seasquirt, Halocynthia roretzi, showing soft tunic syndrome Mun,J.Y., Jang,H.N., Ha,M.A., Nho,S.W., Cha,I.S., Park,S.B., del Castillo,C.S., Jung,C.Y., Kim,Y.K., Kim,Y.R., Aoki,T.T. and Jung,T.S. 1982-05 — GenBank