Protein

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Genbank accession
YP_009966642.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANKPTQPLFPLGLETSESSNIKGFNNSGTIEHSPGAVMTFPEDTEVTGLPSSVRYNPDSDEFEGYYENGGWLSLGGGGIRWETLPHAPSSNLLEGRGYLINNTTGTSTVVLPSPTRIGDSVTICDAYGKFATYPLTVSPSGNNLYGSTEDMAITTDNVSATFTWSGPEQGWVITSGVGLGQGRVYSREIFTQILASETSAVTLNTPPTIVDVYADGKRLAESKYSLDGNVITFSPSLPANTELQVIEYTPIQLGNGGGSGSSTITWVYNGGSAIGGETEITLDIVVDDVPAIDINGSRQYKNMGFTFDPLTSKITLAQELDAEDEVVVIINGTPNIYNQIDYTLREVARVTNVKDTEVVYFSVGAVLSGYKVIYDKVTQRSYFIPELPTGTTAVSLSSSAVLVHSAGSVDLGALAVSREEYITLSGTFDSGAVINTKNELLTHTDGKYRWDGALPKTVDAGSTPASTGGIGVGKWLSVGDAALRTNLASYNGFSLIGVCPDVITLRTLSVPIGKKVLLLGYHSDHPGTGGGTLYASSDTSLADDGVRVFVTSDGTRLVRETNGELYASWAGAVGDWNGTTGTDNKEAIERLITASGTEFKWVIDLTNIGVSSVVIDNKNNWNGHINGSVINISAKPAAGAVDRKDQDGGLLPTIKITNSDGWKLTGSFVDNRYREAFYVEYCDNFELGCANLGSGINNNLAANHFRYCNHFKLNGWKVEKSGVIPLAGYYDWVQAIRMWDCSGFIIDGLTSHMNAGNGIYIASNCKDYVVTNFDITENAMSGIQLAWSGFGVMPIRGVISNGTITGNRADSIDVNNTSGIKARLDLIISGVINANNGYNSDGTVTADGSGLGTFINVSHFIVDECSSTSPARSGVAISNCSNFRVKGIIKKDQPSNSDGHGVYIENSADGEIDVDCITDSANANMYSIRTYGALENIHLSGKYVGYTLFGDDATYVNCSLDKASIISPTTVANRFPWENVNVVVSGSNAVDIKSTVNSCRFVSNNGHGGVLSSGNNDISDSEFYGTDGGLYCADNIGQVRVRGGVAQGGSAAGLRISGGEKHIIEGLTTKSTSGNSCVITNASKVIYIGNDDSANPTNFTGTTFTLQN
Physico‐chemical
properties
protein length:1109 AA
molecular weight: 117504,82920 Da
isoelectric point:4,70987
aromaticity:0,08386
hydropathy:-0,14085

Domains

Domains [InterPro]
DC_1946
ATT
1–686
DC_1946 IPR012334 DC_0586
G3DSA:3.30.2020.50
ATT
335–420
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050 IPR006626 IPR006626 IPR006626
IPR040775
RBD
416–481
IPR040775 IPR006626 IPR006626 IPR006626
YP_009966642.1
1 1109
Architecture
ATT
STR
RBD
ATT 1-686 | STR 687-963 | RBD 964-1109
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009966642.1
1 1109
Domain Start End Length (AA) Confidence
N-terminal 1 580 580 0,9955
Central domain 581 1098 519 0,9945
C-terminal 1099 1109 10 0,2449
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-580
Central
581-1098
C-terminal
1099-1109

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Se-G
[NCBI] 		2698907 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009966642.1 [NCBI]
Genbank nucleotide accession
NC_049496.1 [NCBI]
CDS location
range 99642 -> 102971
strand -
CDS
ATGGCCAACAAACCAACACAGCCTCTTTTCCCTTTGGGTTTAGAAACTTCTGAGTCTTCGAACATAAAAGGCTTCAACAACTCCGGCACTATTGAGCATTCCCCTGGTGCCGTAATGACATTTCCTGAAGATACTGAAGTTACAGGTCTTCCATCTTCTGTGCGTTACAATCCTGATAGTGATGAATTTGAAGGTTATTACGAAAACGGTGGTTGGTTGTCTTTGGGGGGCGGTGGAATACGCTGGGAAACGCTCCCTCACGCTCCCTCTAGCAATTTGTTAGAAGGTCGTGGCTATCTCATTAATAATACCACAGGGACATCTACAGTGGTTCTCCCTTCCCCTACGCGTATTGGGGATTCCGTTACTATTTGTGATGCTTATGGGAAATTTGCCACTTACCCATTGACCGTGTCTCCTTCTGGAAATAATTTGTATGGCTCCACTGAAGACATGGCTATAACAACTGATAACGTATCAGCAACGTTTACTTGGTCTGGACCTGAACAAGGTTGGGTTATCACATCCGGCGTCGGTCTTGGTCAAGGCCGTGTCTACAGTCGTGAAATCTTTACACAAATTTTGGCGTCTGAAACAAGTGCTGTCACTCTCAATACTCCACCAACAATCGTGGACGTGTATGCTGACGGAAAACGTCTTGCGGAATCCAAATATTCATTAGATGGGAATGTAATCACTTTCAGTCCTTCTTTGCCAGCCAACACAGAACTTCAGGTGATTGAATATACTCCGATTCAATTGGGTAATGGCGGTGGTTCTGGTTCTTCTACGATTACCTGGGTCTATAATGGGGGTTCAGCGATTGGCGGTGAAACCGAAATCACGTTAGACATCGTTGTTGATGATGTTCCGGCCATTGATATAAACGGAAGTCGCCAGTATAAAAATATGGGGTTCACATTCGATCCATTAACCAGTAAAATCACTCTTGCACAAGAACTGGATGCAGAGGATGAAGTTGTTGTAATTATCAATGGAACGCCAAACATCTATAATCAAATTGATTATACTTTGCGGGAAGTGGCTCGTGTAACCAATGTTAAAGATACAGAGGTCGTTTATTTTAGTGTTGGTGCTGTGTTAAGCGGGTATAAAGTTATCTATGATAAAGTAACACAGAGATCATATTTTATTCCAGAGTTACCGACTGGAACCACGGCAGTCAGCCTTAGTTCTTCGGCTGTGCTTGTGCATTCTGCTGGTAGTGTTGATCTGGGCGCATTAGCTGTATCTCGTGAAGAATATATTACATTGTCTGGGACATTTGATTCTGGTGCTGTCATCAATACTAAAAATGAATTACTCACCCATACGGACGGTAAGTATCGTTGGGATGGGGCATTACCTAAAACTGTCGATGCTGGATCAACGCCTGCATCAACTGGTGGCATCGGCGTAGGGAAGTGGTTAAGCGTTGGCGATGCGGCATTACGAACTAATTTAGCTTCTTATAATGGTTTTTCCCTGATTGGTGTGTGTCCTGATGTAATCACGTTGCGAACGCTTTCCGTACCAATTGGTAAGAAAGTATTGTTGCTCGGATATCATTCAGATCATCCTGGCACTGGCGGCGGAACCCTTTACGCCTCAAGTGATACATCACTAGCTGATGATGGTGTACGTGTTTTTGTCACATCAGATGGAACCCGTTTGGTAAGAGAGACTAATGGGGAGTTATATGCCTCATGGGCAGGTGCTGTTGGTGACTGGAACGGAACTACTGGCACAGATAATAAGGAAGCAATAGAACGGCTTATCACAGCATCAGGGACTGAATTTAAATGGGTTATTGATTTAACGAATATTGGCGTAAGTTCTGTCGTTATTGATAACAAAAATAACTGGAATGGGCATATAAACGGCAGTGTAATCAATATTTCAGCTAAGCCAGCTGCCGGTGCCGTAGACAGAAAAGATCAGGATGGTGGATTGCTACCAACCATTAAAATTACAAACTCTGATGGCTGGAAATTAACAGGTTCTTTTGTCGACAATCGTTATCGTGAGGCTTTCTATGTAGAATACTGCGATAACTTTGAACTAGGCTGCGCAAACCTTGGTAGTGGAATTAACAATAATCTTGCGGCTAACCATTTCAGATACTGTAACCATTTTAAGTTAAATGGATGGAAGGTTGAAAAGTCGGGGGTTATTCCACTTGCAGGTTATTACGATTGGGTTCAAGCTATAAGGATGTGGGACTGCTCTGGATTTATCATTGATGGATTAACATCACACATGAATGCAGGTAATGGTATTTATATCGCCAGTAACTGCAAAGACTATGTTGTTACTAACTTTGACATAACAGAAAACGCCATGTCAGGAATACAGCTCGCTTGGTCAGGTTTTGGTGTAATGCCAATTAGAGGTGTTATCTCTAACGGAACCATCACTGGAAACAGGGCTGACAGTATAGACGTTAACAATACCAGCGGTATCAAAGCGAGACTTGATCTGATAATTTCCGGTGTTATAAATGCAAACAATGGTTACAACTCTGACGGAACGGTAACTGCCGACGGTTCTGGTTTGGGTACATTTATTAATGTTTCCCATTTCATAGTTGACGAGTGCTCTTCAACATCGCCAGCCCGCTCTGGAGTAGCTATAAGTAACTGCTCCAATTTCAGAGTAAAAGGTATTATAAAAAAAGACCAGCCATCTAATAGTGATGGACATGGGGTATACATTGAAAACAGCGCTGATGGTGAAATAGACGTTGACTGTATTACTGACTCTGCTAACGCAAACATGTACTCCATACGAACTTACGGGGCGCTTGAAAACATACACCTTTCAGGCAAATATGTTGGATATACCTTGTTTGGAGATGATGCAACTTATGTTAACTGCTCTCTTGATAAAGCGTCAATAATTTCCCCGACTACAGTCGCAAATCGTTTCCCATGGGAAAATGTGAACGTAGTTGTTTCTGGTTCAAATGCTGTTGATATCAAATCAACAGTGAATAGTTGCCGATTTGTTTCTAACAATGGTCATGGGGGTGTGTTGTCTTCAGGTAACAACGATATTTCTGACTCAGAATTCTATGGAACAGATGGTGGACTTTACTGTGCTGACAACATTGGTCAGGTTAGGGTTAGAGGTGGTGTAGCCCAGGGTGGCTCAGCAGCAGGACTACGAATTAGTGGTGGTGAAAAGCATATCATTGAAGGGTTAACCACAAAATCAACATCAGGCAACTCCTGTGTTATCACCAATGCTTCCAAAGTGATATACATTGGAAATGATGACTCTGCTAACCCAACAAACTTTACAGGAACAACATTTACACTTCAGAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
58c4e32585274d1f74fd9dae1f538c62d90f61dc8ae9c95f61eeeac378b991af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7700
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50