Protein

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Genbank accession
YP_010670306.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,72
Protein sequence
MSKFLSGRQSQLNVGVTSSTESKTVLQVTGKVGIGTTNAGSRSLYVIGDTQTTGVTTLSSSGGITTTGGDLYVGGDLYVQDDLVFDEFTARNANISGVATIRNANITGIATITNIVGTGATIGRIVSAGTSFSQLQVSGISTFNNGPVFIGSGTTTGTVSQRLQVTGGAYVSGAIGVGTTNPRETLDVIGTVGVQASGSANRFEIQHNAALNSLDFIFI
Physico‐chemical
properties
protein length:219 AA
molecular weight: 22226,40450 Da
isoelectric point:5,70194
aromaticity:0,05936
hydropathy:0,16347

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010670306.1
1 219
Domain Start End Length (AA) Confidence
N-terminal 1 45 45 0,7989
Central domain 46 208 164 0,5225
C-terminal 209 219 10 0,9737
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-45
Central
46-208
C-terminal
209-219

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SRM01
[NCBI] 		2781608 Uroviricota > Caudoviricetes > Pantevenvirales > Serangoonvirus > Serangoonvirus essarone
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010670306.1 [NCBI]
Genbank nucleotide accession
NC_070963 [NCBI]
CDS location
range 214608 -> 215267
strand +
CDS
ATGTCAAAGTTTCTTTCCGGCAGACAATCACAACTAAATGTAGGAGTAACCTCAAGTACTGAAAGTAAAACAGTATTGCAGGTTACTGGTAAAGTTGGTATTGGAACAACAAATGCTGGAAGTAGAAGTTTATATGTAATTGGTGATACTCAAACTACAGGGGTTACAACTCTTTCTTCTTCTGGTGGCATTACAACCACTGGTGGAGATCTTTATGTTGGTGGTGATTTATATGTTCAAGATGATTTAGTATTTGATGAATTTACTGCTCGTAATGCAAACATAAGTGGTGTTGCTACAATTCGCAATGCTAATATTACTGGAATTGCAACGATTACTAATATCGTTGGCACTGGAGCAACGATTGGTCGTATTGTTTCTGCAGGGACTTCATTCTCACAGTTACAAGTCAGTGGAATTTCTACATTTAATAATGGTCCCGTATTCATTGGATCTGGTACAACTACAGGAACTGTATCTCAAAGACTTCAAGTTACTGGTGGTGCATATGTTTCTGGTGCGATTGGAGTGGGAACTACAAATCCAAGAGAAACACTAGATGTAATTGGAACTGTTGGTGTCCAAGCAAGTGGTTCTGCAAATCGTTTTGAGATTCAACATAATGCTGCTCTTAATTCTCTGGACTTTATCTTTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
51a483bcf52a72c73c95c9c542ce758fc2fa4850c6848e58439b09dbe025ff06
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7082
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50