Protein

View in Explore
Genbank accession
AUR96934.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPITLPEVKSGYNLGLINDNFQTIQDAWDEKLDRLSATQPNQLEQNIDMNSNRIINHPNARIGDVTGNQDVVLVEDITKLGDYSGVVPTVDSYLGDGSRTSFPFSSAVTDPKAVQLYVGGLRQEPYTDYVLNGSNIILTTAPVLDVEVDIYAYNPTILENGAPVYAEPKHDTFTGDGSQVQFTVSAVGASTLEAMCYIDGVKQNPFDDYVSQNGVTTFTEAPPLNSQIDITIWAPFSINADNSQVTADGSTTARSLSERFADVVNVKDFGAVGDGVADDRAAIQSAIDYAVPKGINIFFPVPDVTYTIKTVNPVQPDYAIIIPASTQGETTSGMIGGGRDTHIKLEIDTTITAMVLFDGPSWGRKLTNLYLNANYLADYVLLADNDYHPYMHVEDCSFYRCIEECVRVATFMANWTRVTTAWAKQGYHFTGSGENRLVTSLSMESCYAVNCSDYGFWFDELTYCSFNACGCDGSGVAYYIDIARGVSFNGCGSESSRKILEIRACQGTTVNGMMGLNMGDASSPVDNLIQIETGESFTIAGLYITGSTGQYDKKLELLTGSFQSSCVVVLDSSVSPSQARWVDNVTFDKPMKFVVYDTTNRARTYDITDYNAFVELMDTEFTEKTILHPITFNLPDGDFYCNSLDLLPSCAGSGSITFQGGTGTRWIVRTDESVNLANYTGEVTFKDMSFTFDGTNPVGLGFYKCSNIIFDGVTVAAGNPNDKRIVLSGSNLFITNSTVGTSWTTVGKWGITTPLMSNAPSTGIWPTAVKVYDQFPSASRTGWVIDSTGTWLEF
Physico‐chemical
properties
protein length:794 AA
molecular weight: 86516,48820 Da
isoelectric point:4,33775
aromaticity:0,10705
hydropathy:-0,11889

Domains

Domains [InterPro]
DC_2003
STR
1–630
DC_2003
IPR012334
STR
244–582
IPR012334
IPR011050
STR
261–511
IPR011050
IPR024535
ENZ
264–300
IPR024535
AUR96934.1
1 794
Architecture
STR
STR 1-630 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR96934.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 278 278 0,9922
Central domain 279 748 471 0,9859
C-terminal 749 794 45 0,9472
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-278
Central
279-748
C-terminal
749-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.235.O._10N.261.52.B2
[NCBI] 		1881352 No lineage information
Host Vibrio lentus
[NCBI] 		136468 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR96934.1 [NCBI]
Genbank nucleotide accession
MG592599 [NCBI]
CDS location
range 375 -> 2759
strand +
CDS
ATGCCAATTACTCTACCAGAAGTTAAAAGTGGTTACAACTTAGGTTTAATCAATGATAACTTCCAAACAATTCAAGATGCATGGGATGAGAAGCTAGATCGACTATCAGCTACACAACCAAACCAACTTGAACAAAATATTGATATGAATTCAAATCGTATCATCAACCATCCTAATGCACGTATTGGCGATGTTACCGGTAATCAAGATGTAGTGTTAGTAGAAGATATTACTAAGCTTGGTGATTACAGTGGCGTTGTACCTACAGTTGATTCTTACTTAGGTGATGGTTCTCGAACTTCGTTTCCATTCAGTTCTGCTGTAACAGATCCTAAAGCTGTACAACTTTATGTTGGTGGTTTGCGTCAAGAACCTTACACCGATTACGTTCTTAATGGTTCGAACATCATTCTTACAACAGCTCCAGTATTAGATGTTGAAGTTGATATCTATGCGTACAACCCTACTATCTTAGAGAACGGCGCTCCAGTATATGCCGAACCTAAACACGATACGTTTACGGGTGATGGCTCTCAGGTACAGTTTACTGTATCAGCTGTTGGTGCGTCTACACTAGAAGCTATGTGTTACATTGATGGCGTTAAACAAAACCCATTCGATGACTATGTATCTCAGAATGGTGTAACAACCTTCACAGAAGCTCCACCACTTAACAGCCAAATCGATATCACGATTTGGGCACCTTTCTCGATTAACGCAGATAACTCACAAGTCACTGCTGATGGTTCAACTACAGCCCGTAGTTTGTCAGAACGATTTGCAGATGTTGTTAATGTTAAAGATTTTGGGGCAGTAGGTGACGGAGTGGCAGATGATCGAGCAGCTATCCAATCTGCAATAGATTACGCGGTTCCTAAAGGTATTAATATCTTTTTCCCTGTACCTGATGTGACCTATACTATTAAGACTGTTAACCCGGTACAGCCAGATTACGCTATCATAATCCCTGCTTCAACGCAAGGGGAGACTACATCTGGGATGATTGGTGGGGGTCGCGATACACATATTAAGTTAGAGATAGACACAACTATTACAGCAATGGTGCTGTTTGACGGCCCTTCTTGGGGGCGTAAACTTACTAACTTATATTTGAATGCAAACTACCTAGCGGATTATGTTCTTTTAGCAGATAACGACTACCACCCTTATATGCATGTAGAGGATTGCTCTTTCTACAGATGCATAGAAGAGTGTGTACGTGTGGCTACCTTTATGGCAAACTGGACTCGTGTCACTACGGCGTGGGCTAAACAAGGATACCACTTCACAGGTTCAGGTGAAAATCGACTAGTAACTTCTCTATCTATGGAGAGTTGCTATGCAGTGAATTGTTCTGATTACGGCTTCTGGTTTGATGAGTTAACATACTGCTCATTTAATGCATGTGGTTGTGATGGTTCGGGGGTAGCTTACTACATAGACATTGCCAGAGGGGTTAGTTTTAATGGTTGTGGTTCAGAGAGTAGCCGTAAAATCCTGGAGATTCGTGCCTGCCAAGGAACTACAGTCAACGGTATGATGGGCTTAAATATGGGTGATGCAAGTTCTCCTGTAGATAACCTTATCCAGATTGAAACCGGGGAGTCTTTCACTATTGCGGGATTGTACATCACTGGGAGTACAGGACAGTATGATAAGAAACTGGAACTTCTTACAGGCTCCTTCCAATCTTCATGTGTGGTTGTTCTAGACAGCTCTGTTAGTCCTTCCCAAGCTAGGTGGGTTGATAATGTAACATTCGACAAACCAATGAAGTTTGTTGTTTATGATACAACCAACCGTGCTAGAACTTACGATATTACCGACTACAATGCTTTCGTCGAACTGATGGATACTGAGTTCACTGAGAAAACTATACTCCACCCAATCACATTCAATCTCCCAGATGGGGATTTCTATTGTAACAGCTTAGACTTACTTCCTTCTTGCGCAGGGTCAGGATCTATCACTTTTCAAGGTGGTACAGGTACTCGTTGGATTGTAAGAACTGACGAGTCTGTGAACTTAGCGAACTACACGGGGGAAGTTACTTTTAAAGATATGTCTTTCACTTTTGACGGCACTAACCCTGTTGGACTAGGTTTCTATAAATGCTCTAATATTATCTTCGATGGAGTTACAGTAGCGGCAGGAAACCCTAATGATAAGCGTATTGTCTTATCCGGTAGTAACCTTTTTATAACAAACTCAACTGTGGGTACTTCATGGACAACTGTAGGTAAATGGGGGATCACTACTCCACTTATGTCCAATGCCCCGTCAACAGGGATATGGCCCACTGCTGTTAAAGTCTATGATCAGTTCCCTTCGGCGTCTCGTACAGGGTGGGTAATTGATTCCACAGGCACATGGTTGGAATTCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
5afeae8e64f0c0f32d70bfefd266ec1ec729fb3873b85833c8dff623b464a7ff
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7396
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank