Protein

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Genbank accession
YP_010763067.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPNIMKPTGINAIWSENGQKVDPGAVKVGLGWVTELPPYQTANFIEYKQDLFNAHVNQHGIPEWDSVTEYQGNLSYTQGANGIIYKCLRTHSDKIPTDPLNITAGYWRVAFEDAGEAAKVQANLDRHVTNYNTLSGIGNVVIARQNLSVYSKAEGDARYAMRHGNGSNVFSVAPATQPTHAIPLSQLSTLVPPATETVAGVMAVATTIETEAGANDTKAVSPLKAAQVYLKKKDNLSGLSNVTAARANLGLSDTATMPSSTFLKAGSNLADVPNKALARSNLGITSSATQPETYFLRSAQNLADVPNKAQARVNLGLTGMATTDPAAVMMKADNLAGLANTATARSNLGLGTASTRNTGDFLSSGDNLSDLTNVQAARNNLGLKGAATLDVWGLPANTTAMDFQSSQSDISRGWARLPNGLLLQWGTGPGLSDDTRTNIQLPVPARILNVQVTVMGTFNNSIGPGAFMTDMWSNTGFRVSCNWGNWSYPFNWFAITSTL
Physico‐chemical
properties
protein length:499 AA
molecular weight: 53056,91130 Da
isoelectric point:7,01782
aromaticity:0,07214
hydropathy:-0,21142

Domains

Domains [InterPro]
DC_0043
STR
1–320
DC_0043 DC_0362
G3DSA:2.60.40.3940
RBD
406–495
G3DSA:2.60.40.3940
IPR054075
RBD
416–495
IPR054075
YP_010763067.1
1 499
Architecture
STR
RBD
STR 1-320 | RBD 321-499
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaM_EPA1
[NCBI] 		2587493 Uroviricota > Caudoviricetes > Vandenendeviridae > Pakpunavirus > Pakpunavirus EPA1
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010763067.1 [NCBI]
Genbank nucleotide accession
NC_073609.1 [NCBI]
CDS location
range 47234 -> 48733
strand +
CDS
ATGCCAAACATTATGAAGCCTACGGGTATTAACGCTATCTGGTCTGAAAACGGCCAGAAGGTTGACCCGGGTGCTGTAAAAGTTGGGCTTGGATGGGTGACAGAACTACCTCCCTACCAAACTGCCAACTTCATTGAATACAAGCAAGACTTGTTCAACGCGCACGTTAACCAGCACGGTATTCCCGAATGGGATAGCGTCACAGAGTATCAGGGTAACCTGAGCTACACTCAAGGCGCTAACGGGATCATCTATAAGTGCCTTAGAACCCATTCCGACAAGATTCCAACTGACCCTCTGAACATTACAGCCGGATATTGGCGGGTGGCGTTCGAGGATGCAGGGGAGGCGGCCAAGGTTCAAGCTAACCTTGATCGGCACGTGACAAACTACAACACCCTCTCTGGGATTGGTAACGTAGTTATTGCAAGACAGAACCTGAGTGTGTATAGTAAGGCCGAAGGCGATGCACGTTATGCCATGCGGCACGGCAACGGGTCTAACGTCTTCAGCGTCGCTCCCGCAACACAGCCAACTCACGCGATCCCGCTGAGCCAGCTATCGACTCTCGTTCCTCCTGCGACCGAGACTGTAGCCGGGGTTATGGCAGTTGCTACGACTATCGAGACAGAAGCTGGAGCCAATGATACCAAGGCTGTGAGTCCGCTCAAGGCCGCACAGGTGTATCTGAAGAAGAAAGACAACCTTTCCGGTCTGTCTAACGTCACTGCCGCAAGAGCTAATCTAGGACTGTCGGATACAGCGACTATGCCTTCTTCTACATTCCTGAAGGCAGGTAGCAATCTGGCAGATGTGCCTAACAAGGCGCTGGCAAGATCGAATCTTGGAATTACAAGTAGTGCTACCCAGCCGGAAACCTATTTCTTGAGGAGCGCTCAGAACCTAGCAGATGTACCTAACAAGGCACAAGCTAGAGTCAACCTAGGCCTCACTGGGATGGCTACAACAGACCCTGCGGCGGTTATGATGAAGGCAGACAACCTTGCTGGATTGGCTAACACTGCTACCGCTCGGTCCAACCTAGGGCTAGGCACAGCTTCTACTAGAAATACAGGAGACTTCCTGTCGTCTGGGGATAACCTGTCCGACCTCACGAATGTCCAAGCAGCTAGAAACAACCTAGGGTTGAAGGGAGCGGCTACGCTCGATGTATGGGGTCTTCCTGCGAATACAACTGCCATGGACTTCCAGTCCAGTCAGTCGGATATTTCCAGAGGATGGGCTCGACTACCAAACGGCCTTCTGCTACAATGGGGAACTGGTCCCGGTCTGTCTGATGACACAAGGACGAATATTCAACTCCCTGTTCCTGCCCGCATCTTGAACGTGCAAGTGACTGTAATGGGGACGTTTAACAACTCCATCGGCCCGGGCGCTTTCATGACGGATATGTGGAGTAACACGGGGTTCAGAGTTAGCTGCAACTGGGGTAACTGGTCTTATCCGTTCAACTGGTTTGCTATCACTTCAACCCTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5db3620560ac58139635f4712c09438b86f87c806ab0da1230f85cae86f2d275
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7536
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of Pseudomonas phage EPA1 Akturk,E., Melo,L., Santos,S., Oliveira,H. and Azeredo,J. 2016-12-01 — GenBank