Protein

View in Explore
Genbank accession
YP_007236353.2 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MEQTDNYIGQWFNAIGVQQNYKTMQYFAGDGDASRTFEFNFDGGYISKSDVKAFAVKDDSRERIDYTLTFIGPNSVNLNAVVPVGWTVLIYRDTPKSRPLAKFIDGAVINAFNLDRNAQQAVFAVAEMVDRFDSVTADVETALTEVYKAITFSEQAVAEAQEATRVATESKAAALAAESSAAQAALDAAEANVTADSAKLIAEGIEGKADLAISTANTAKSTADTAKATADAAKVTAEGIEGKADAAIATANSAKTESAAAKTTANEAKATANAIDGKAQEALDKATQAQADVSTAVAGKVSKSGDTMIGPLILNADATDPRGAVTKQQLEQQGGAPLTSVLWWHMRSAIPAYYIPADGQILTRSMYPGVWQMIADGKVPVVPESTWLADPKWRGCYTVGNGVSTFRVPDYNGKSAGSHGAVFLRGDGLNSDGTSGTIQRDAIRDIVGDLGNIGAKTGNAYPLSIQGSGAFTRSTASTGYTAASNPAGQVLVDGTWQGATFKASNVVPTGADNRPVNATGCYVIRMAGGYINVANIDAENLAQAISEMSTRIQVTENNILDINARPYIERRIVLPATHAYTDVGIRTEWSDGHCEISGSALGNSAADTAFFFGGNLPVFYEAQLTEHYYYIATGNRNIYIQAVHLDRLTFRGGMGEPNRVSISVTGKWK
Physico‐chemical
properties
protein length:669 AA
molecular weight: 70752,86510 Da
isoelectric point:5,01777
aromaticity:0,08072
hydropathy:-0,19223

Domains

Domains [InterPro]
DC_0044
STR
3–663
DC_0044
IPR005604
ATT
23–131
IPR005604 Coil SSF88874 Coil
YP_007236353.2
1 669
Architecture
STR
ATT
STR
STR 3-22 | ATT 23-131 | STR 132-663 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phi80-18
[NCBI] 		1206559 Uroviricota > Caudoviricetes > Autographivirales > Melnykvirinae > Pokrovskaiavirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007236353.2 [NCBI]
Genbank nucleotide accession
NC_019911.2 [NCBI]
CDS location
range 36005 -> 38014
strand +
CDS
ATGGAACAGACAGATAATTATATTGGCCAGTGGTTTAACGCCATTGGTGTGCAGCAGAACTACAAAACCATGCAGTACTTTGCAGGTGATGGTGATGCCTCACGTACCTTTGAGTTTAACTTCGATGGTGGCTACATTTCTAAAAGTGATGTTAAGGCGTTTGCTGTTAAAGACGACAGCCGTGAGCGAATTGACTACACACTAACATTCATCGGGCCTAACTCCGTTAACCTTAACGCAGTTGTGCCGGTAGGCTGGACAGTCCTGATTTACCGGGATACACCAAAATCTCGCCCACTGGCTAAGTTCATTGATGGTGCTGTAATAAACGCATTCAACCTTGACCGAAACGCACAGCAGGCAGTATTCGCTGTGGCAGAGATGGTTGACAGGTTTGACTCCGTAACAGCAGACGTTGAGACGGCATTGACTGAAGTGTATAAGGCTATTACATTTTCAGAACAGGCTGTAGCAGAGGCACAGGAAGCTACACGGGTTGCTACCGAATCTAAGGCGGCCGCATTAGCAGCCGAGTCTAGCGCCGCTCAAGCAGCTTTAGATGCAGCGGAAGCTAACGTTACTGCTGACAGTGCTAAGTTGATTGCAGAAGGTATAGAAGGTAAGGCTGACCTGGCTATCTCAACAGCCAATACCGCTAAGTCTACAGCAGATACTGCAAAGGCTACAGCAGATGCTGCTAAGGTTACGGCAGAAGGTATCGAAGGTAAGGCAGATGCTGCTATCGCAACTGCTAACTCCGCTAAGACAGAATCGGCGGCAGCAAAGACCACGGCTAATGAAGCTAAAGCTACAGCAAATGCTATTGATGGTAAAGCACAGGAAGCTCTGGACAAGGCTACTCAAGCACAGGCTGATGTCAGTACTGCTGTTGCTGGGAAGGTGAGTAAGTCAGGTGATACTATGATTGGCCCACTTATCCTTAATGCCGATGCTACTGACCCACGTGGGGCTGTAACTAAGCAGCAGTTAGAGCAACAGGGTGGTGCTCCACTTACTTCAGTTCTGTGGTGGCATATGCGCTCGGCTATTCCTGCTTACTATATACCTGCGGATGGTCAAATACTTACACGCTCTATGTACCCAGGTGTGTGGCAGATGATAGCTGACGGTAAAGTTCCTGTTGTTCCAGAATCCACTTGGTTAGCTGACCCTAAATGGCGTGGATGTTACACAGTGGGTAACGGAGTATCCACATTCCGTGTTCCAGACTACAATGGTAAGAGTGCTGGTTCTCATGGTGCAGTGTTCCTACGTGGTGATGGTTTGAACTCAGATGGAACTTCTGGTACTATACAGCGAGATGCCATTAGAGACATAGTTGGCGATTTAGGTAATATAGGGGCTAAGACTGGTAATGCCTACCCACTCTCTATTCAAGGTAGTGGGGCATTTACACGTTCGACTGCTTCTACAGGTTACACGGCTGCTAGCAATCCAGCCGGGCAGGTTCTTGTAGATGGTACTTGGCAAGGAGCTACATTTAAAGCTTCAAACGTAGTACCAACAGGTGCAGATAACAGACCTGTTAACGCCACGGGGTGCTATGTAATACGTATGGCGGGTGGTTACATAAATGTAGCTAACATTGACGCTGAGAACTTAGCTCAGGCAATATCCGAGATGTCTACAAGAATCCAGGTAACTGAGAATAATATCTTAGATATTAATGCCCGTCCGTATATAGAGCGGCGCATTGTACTGCCTGCGACACATGCGTATACAGATGTAGGTATACGTACAGAGTGGTCAGATGGACACTGTGAGATAAGCGGCTCTGCATTGGGTAACTCTGCGGCAGATACTGCATTCTTCTTTGGTGGTAACCTACCTGTATTCTATGAAGCACAGTTAACTGAACACTACTACTACATTGCCACAGGTAACCGTAACATATACATACAAGCGGTTCACCTGGACAGGCTTACTTTCCGAGGTGGTATGGGCGAGCCTAACCGGGTATCAATCAGCGTAACTGGTAAATGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0d19a5553db33839e3e9d7f1ca2514c718c0e489dff7097164eecfa3420186d8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7036
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank