Protein

View in Explore
Genbank accession
XVB76496.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKAVGTMASMIHGVSEQEPHNRQPGKMWESINMFDSPTRGKVRRRGSVYMHHKALPSAVAEAVSTARNMEEYTFFIDGYEYSLIYRSTAGEGGKDYFAQLVAKDTSEFYDIVYENSTWVDNLIAGGVSAIAALGRYVYIAGNTTIPRATSTDVWDTPANYQKLAGWVREGAYSRKYTVQLTHVNGTKQEYSYTTKPSAYPELLDTTDIPFWKPGSNPQEPRPDYQKDVADRTNAYEGKRSAWIKEAAEDIVPANIAAKLAEAMSIAGISTTSMGGCVLVDDPNYNDIKLLDDGNGSLVSYAGKEVSDPQFVTLYHWAGKIVRVRPSGGGDKESYYLKAVPLDGGSGWTKVEWVEAAGVEHKIENVVSQLVIDRAGKTAYVAQDGEGLKSLAPQLGDHPIYKENAVGDGVTAPLPYFFGRKISCLTVFQDRLVVMADNMVNMSRSSDYLNFFRQTVLNIQDNDPIEVFAHGSEGDVIERAVMYDKSLVMFGRLRQYAVDGRTFFSPTNPALNVIGNYEGGTAAQPIATGNFLFFGKKAAERTGLHQMRPGDTPETTVVYEVSQELDTWLTGQPVQLMGMTQPDMVTFRTDASPSIWYLYKYADQDGVGRVLSSWGKFAYSEELGTVAGITHHDGEMLIVTLRSAGGKDYWFLDRLSLETKLSDRPHLDSQVDFDKETDWHKAQADKLYAAARKPSEYFLLGSPRVGADDFIEQAPGVESSLVVGSVSPAMFQITNPYMRDNQGMPILAAKLQLVSYSFHLADTGGFRAYVLRPDPQRTMWFEGRVIGHTSNVIGRQPVFSGTRSVSVGKESRACIVELRSEDWQPLRVTGAEWSGQSFMPRARGMY
Physico‐chemical
properties
protein length:846 AA
molecular weight: 93711,27280 Da
isoelectric point:5,53830
aromaticity:0,10638
hydropathy:-0,36170

Domains

Domains [InterPro]
DC_0058
STR
1–846
DC_0058
IPR058003
TTP
139–844
IPR058003
XVB76496.1
1 846
Architecture
STR
STR 1-846
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB76496.1
1 846
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,8657
Central domain 154 352 200 0,4727
C-terminal 353 846 493 0,3242
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-352
C-terminal
353-846

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage BUCT799
[NCBI] 		3434656 Viruses >
Host Stenotrophomonas sp.
[NCBI] 		69392 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB76496.1 [NCBI]
Genbank nucleotide accession
PV714881 [NCBI]
CDS location
range 4353 -> 6893
strand -
CDS
ATGGCGAAGGCAGTAGGCACGATGGCTTCGATGATCCACGGCGTGTCCGAACAGGAACCGCACAATCGTCAGCCCGGCAAGATGTGGGAGAGCATCAACATGTTCGACAGTCCGACTCGCGGCAAGGTCCGCCGTCGCGGCTCCGTCTACATGCACCACAAGGCGCTGCCGTCTGCCGTCGCGGAAGCTGTCAGCACCGCACGGAACATGGAGGAGTACACCTTCTTCATCGACGGCTACGAGTACAGCCTGATCTACCGCAGCACTGCGGGTGAGGGCGGCAAGGATTACTTCGCGCAGCTTGTGGCGAAGGACACCAGCGAGTTCTACGACATCGTGTACGAGAACAGCACGTGGGTGGACAACCTGATTGCCGGTGGCGTGTCCGCAATCGCGGCGCTTGGCCGGTACGTGTACATCGCAGGCAACACCACGATCCCGCGTGCGACCTCGACGGACGTGTGGGATACTCCCGCCAACTATCAGAAGCTCGCAGGCTGGGTGCGCGAGGGTGCGTACAGCCGGAAGTACACGGTGCAGCTGACGCATGTCAACGGTACCAAGCAGGAGTACAGCTACACCACGAAGCCCTCCGCTTATCCGGAACTGCTGGACACCACGGACATTCCGTTCTGGAAGCCCGGAAGCAATCCGCAGGAGCCGCGCCCTGACTACCAGAAGGACGTGGCTGATCGCACCAACGCGTACGAGGGCAAGCGCTCCGCGTGGATCAAGGAAGCCGCCGAGGACATCGTTCCCGCGAACATCGCGGCCAAGCTCGCCGAGGCTATGTCCATCGCAGGTATCTCGACCACGAGCATGGGCGGCTGCGTGCTGGTGGACGATCCGAATTACAACGACATCAAGTTGCTGGATGACGGCAACGGCTCGCTGGTGTCGTATGCAGGCAAGGAAGTGAGCGACCCGCAGTTCGTCACGCTGTATCACTGGGCTGGTAAGATCGTCCGCGTGCGTCCGAGCGGTGGCGGTGACAAGGAATCGTACTACCTCAAGGCTGTGCCGCTGGACGGTGGCTCGGGCTGGACCAAGGTGGAGTGGGTGGAAGCTGCCGGTGTCGAACACAAGATCGAGAACGTGGTGTCCCAGCTGGTCATCGACCGTGCAGGCAAGACCGCGTACGTCGCACAGGACGGTGAGGGCTTGAAGTCCCTCGCGCCGCAGCTGGGCGATCATCCGATCTACAAGGAGAACGCTGTCGGTGACGGAGTGACCGCACCGCTGCCGTACTTCTTCGGTCGCAAGATCAGCTGCCTTACCGTGTTCCAAGATCGCCTCGTGGTGATGGCGGACAACATGGTGAACATGTCCCGCTCGTCGGACTACCTGAACTTCTTCCGACAGACCGTGCTGAACATTCAGGACAACGATCCGATTGAGGTGTTCGCGCATGGCTCCGAAGGCGACGTGATCGAGCGTGCAGTGATGTACGACAAGAGCCTCGTGATGTTCGGGCGACTGCGGCAGTACGCTGTTGATGGACGCACGTTCTTCTCCCCGACGAACCCGGCACTGAACGTGATCGGGAACTACGAGGGCGGCACCGCTGCGCAGCCCATCGCTACCGGTAACTTCCTGTTCTTCGGGAAGAAGGCGGCAGAGCGCACGGGCCTGCACCAGATGCGTCCGGGCGACACTCCCGAGACGACTGTGGTTTACGAGGTGTCGCAGGAGTTGGATACGTGGCTGACCGGGCAACCGGTGCAGTTGATGGGAATGACGCAGCCGGACATGGTTACTTTCCGCACCGACGCGTCGCCGTCGATTTGGTACCTGTATAAGTACGCAGACCAAGACGGTGTTGGTCGAGTCCTGTCAAGCTGGGGCAAGTTCGCCTACAGCGAGGAACTCGGTACCGTTGCTGGTATCACCCATCACGACGGCGAGATGCTGATCGTAACGCTGCGGAGCGCAGGCGGTAAGGACTACTGGTTCCTTGACCGGCTCTCCCTTGAGACGAAGCTGTCGGATCGCCCGCACCTTGACTCGCAGGTGGACTTCGACAAGGAGACTGACTGGCATAAGGCGCAGGCTGACAAGCTGTACGCAGCAGCCCGCAAGCCCTCGGAATACTTCCTGCTTGGTTCGCCACGCGTAGGTGCAGACGACTTCATCGAACAGGCACCCGGCGTCGAATCCAGTCTGGTTGTGGGTAGTGTGTCCCCGGCGATGTTCCAGATCACGAACCCGTACATGCGGGACAATCAGGGCATGCCGATCCTCGCCGCGAAGTTGCAGTTGGTTTCGTACAGCTTCCATCTGGCAGACACTGGCGGGTTCCGGGCTTACGTCCTGCGTCCCGATCCGCAGCGTACCATGTGGTTTGAGGGTCGGGTCATCGGGCACACGAGCAACGTCATCGGGCGTCAGCCTGTGTTCAGTGGCACGCGATCCGTGAGCGTAGGCAAGGAGTCCCGAGCCTGCATCGTTGAACTGCGGTCAGAGGATTGGCAGCCGCTCCGCGTCACTGGCGCTGAGTGGTCCGGTCAGTCCTTCATGCCGCGCGCACGAGGGATGTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eee254a1d3bf938eff343f02f6732dcdf2223c478014335c128817944550f460
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9042
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50