Protein

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Genbank accession
YP_009609777.1 [GenBank]
Protein name
cell wall surface anchor family protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MRGASVSVWFGNGRLAGVTKVDGAATGGVTVEVFHKASGVRVASVVSNTPTGQFEVLGLNPAETFDLVSKAPGKTAAVSDLREPVAYLDPLQEFVVAQVQFVPGYGHMEIGGAVRVGEATTTAKGLFHRVDDGGPFPGVGAMLRANRTTGDYTHNWIEGPGVACGTADFCAETYVRLHNGGATPLNDVYPRIFQFGSTQGTRGWVLALNMDKRAPNMILETTQNGSYMGGLIASLGQIPNNRWVHVAVTRQGTTWRVFVDGALRGSADYAFDYANTSFYNNRIGLGCNANSSASNETANADFAMFRYTVGNARYTSAFTPPTPYAMPERVYSKWSGDNDSNYADVGEPVTVAIVNPSIARGGFEQWVRADQPKSSGKWYWEVKVLESTSKSLFLGVCDADQGTRASLGYLAWVYVASGSSYNGPLSQQSTYGAAYDNNDVIGFALDIDAGTLECFKNGVSQGIMASNITGTVTPMFAGMTFNYSFSAVQANFGETPFAYSPPSGFNSGWYREL
Physico‐chemical
properties
protein length:513 AA
molecular weight: 54889,48860 Da
isoelectric point:5,48248
aromaticity:0,11891
hydropathy:-0,15906

Domains

Domains [InterPro]
DC_0826
ATT
12–140
DC_0826 G3DSA:2.60.120.200 IPR001870
DC_2085
STR
111–304
DC_2085 DC_1713
PF13385
LEC
162–284
PF13385 IPR043136
IPR013320
STR
172–290
IPR013320 IPR013320
IPR003877
STR
375–496
IPR003877
cd11709
STR
376–482
cd11709
IPR003877
STR
377–494
IPR003877
YP_009609777.1
1 513
Architecture
ATT
STR
STR
ATT 12-140 | STR 141-310 | STR 318-510 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009609777.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 100 100 0,6824
Central domain 101 302 203 0,5304
C-terminal 303 513 210 0,7425
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-100
Central
101-302
C-terminal
303-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Acidovorax phage ACP17
[NCBI] 		2010329 Uroviricota > Caudoviricetes > Busanvirus >
Host Acidovorax citrulli
[NCBI] 		80869 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009609777.1 [NCBI]
Genbank nucleotide accession
NC_041997 [NCBI]
CDS location
range 115883 -> 117424
strand +
CDS
TTGCGGGGTGCCAGCGTGAGCGTTTGGTTCGGCAATGGCCGCCTCGCGGGCGTCACGAAAGTCGACGGCGCAGCGACTGGCGGTGTCACCGTTGAGGTCTTCCACAAGGCTAGCGGAGTGCGCGTAGCGTCCGTGGTTAGCAACACACCCACCGGCCAGTTTGAAGTCTTGGGGCTCAACCCAGCAGAGACATTCGACTTGGTGAGCAAAGCGCCAGGAAAAACTGCTGCGGTCAGTGACCTTCGGGAACCCGTCGCCTACCTCGATCCCTTGCAGGAGTTCGTGGTCGCGCAAGTCCAGTTCGTCCCCGGTTATGGGCACATGGAAATCGGAGGCGCTGTGCGCGTCGGTGAGGCTACCACTACTGCCAAGGGGCTGTTCCACCGGGTAGACGACGGCGGACCATTCCCGGGTGTCGGAGCAATGCTCAGGGCGAACAGGACAACAGGCGACTACACCCACAACTGGATCGAAGGGCCAGGCGTTGCATGCGGTACCGCGGACTTCTGCGCTGAGACCTACGTGCGACTCCACAATGGCGGCGCCACCCCGTTGAACGACGTCTACCCTCGAATTTTCCAGTTCGGTTCTACTCAAGGAACGCGAGGATGGGTGTTGGCGCTCAACATGGACAAGCGAGCGCCCAACATGATCCTGGAAACCACCCAGAATGGTTCCTACATGGGCGGCCTCATCGCATCGCTGGGCCAAATCCCAAACAACCGCTGGGTGCATGTCGCCGTGACGCGTCAAGGGACGACGTGGAGAGTCTTCGTGGACGGCGCTCTCCGAGGATCAGCCGACTATGCGTTCGATTATGCGAACACTTCCTTCTACAACAACCGCATTGGGCTGGGGTGCAACGCGAACAGCAGCGCATCAAACGAGACAGCAAACGCCGACTTTGCGATGTTTCGCTACACCGTCGGCAATGCTCGCTACACCTCCGCGTTCACGCCACCCACACCCTATGCGATGCCGGAACGCGTCTACTCCAAGTGGAGTGGCGACAATGACAGCAACTATGCAGACGTCGGCGAGCCCGTTACGGTAGCCATCGTCAATCCCTCGATCGCTCGGGGTGGATTTGAGCAGTGGGTGCGCGCCGATCAACCCAAGTCCTCGGGCAAGTGGTACTGGGAAGTGAAGGTGCTCGAATCGACTTCGAAGAGCCTGTTCTTGGGCGTCTGCGATGCCGACCAAGGCACGCGCGCATCGCTGGGATACCTAGCCTGGGTTTACGTCGCAAGCGGAAGTTCCTACAATGGGCCTTTGTCACAGCAGAGCACGTATGGCGCGGCCTATGACAACAACGACGTCATAGGGTTTGCGCTTGACATTGACGCAGGAACGCTGGAGTGTTTCAAGAACGGGGTCAGCCAGGGCATCATGGCGTCCAATATCACGGGCACAGTCACGCCGATGTTCGCAGGGATGACTTTCAACTATTCCTTCTCAGCAGTCCAAGCCAACTTCGGAGAGACGCCCTTTGCGTACAGCCCTCCGTCGGGTTTCAACTCTGGGTGGTACCGCGAACTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
459b37ff3da3f542467ab66038db44c07007eeca7cd72a6dece50c72696bd8e8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7792
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of novel bacteriophage infecting the causal agent of bacterial fruit blotch, Acidovorax citrulli Midani,A.R., Park,S.-H. and Choi,T.-J. 2020-06-03 — GenBank