Protein

View in Explore
Genbank accession
WMS59536.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERQEVKNPTGIVTDIAPADLPLEKWSFGNNVRFKNGKAQKALGHTPIFDTAQAPILDMFPFIRNNIPYWLLCSEQRLYLADGTTIIDVSPGPYAASITNRWSVGSFNGVIFANDGVNPPHHLPPSESTFRVLPNFPANTTFKRLKSFKNFLVGLNATSNSVEMPQMVWWSTSADAGGVPASWDPTDPTKDAGQNTLADTNGAIVDGVKLRDSFIIYKEDSVYSMRYIGGLFIFQFQQLFNDVGILGPNCAVEFDGNHFVVGHGDVYVHNGVQKQSVIDAQVRKFFFSDINPDNYQRTFVLADHVNTEMWVCYSSTRSEPGKHCDRAIIWNWKENTWSIRDLPNVLSGAYGIIDPKVSNLWDDDPNPWDTDTSVWGEGSYNPAKSSMIFSSFQDKKLFLFGNNSTFSGQNFVSTLERSDIYLGDDRMMKTVSAIIPHITGNGTCNIWVGNAQVQGSGIRWKGPYPYRIGQDYKIDTKHVGRYIALKFDFSSEGDWYFNGYTIEMAPKAGMR
Physico‐chemical
properties
protein length:513 AA
molecular weight: 57492,93770 Da
isoelectric point:5,71609
aromaticity:0,12865
hydropathy:-0,33099

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMS59536.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 373 373 0,7586
Central domain 374 502 130 0,0881
C-terminal 503 513 10 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-373
Central
374-502
C-terminal
503-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Arefeen1
[NCBI] 		3050039 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMS59536.1 [NCBI]
Genbank nucleotide accession
OR472559 [NCBI]
CDS location
range 29736 -> 31277
strand -
CDS
ATGGCCCTAGAGAGACAAGAGGTCAAGAACCCTACGGGGATTGTGACCGATATCGCCCCCGCTGACCTGCCACTGGAGAAATGGTCCTTCGGGAACAACGTCCGGTTTAAGAACGGCAAGGCTCAGAAGGCTCTGGGCCATACGCCTATCTTTGATACAGCCCAGGCCCCAATCTTGGATATGTTCCCTTTCATCCGGAATAACATCCCCTATTGGCTCCTGTGTTCTGAACAACGGTTGTATCTAGCCGACGGGACTACAATCATCGATGTATCCCCAGGACCTTACGCTGCTAGTATAACTAACAGATGGTCTGTAGGATCGTTCAACGGGGTAATCTTTGCTAACGATGGGGTTAACCCTCCTCATCATCTTCCACCGTCAGAATCAACCTTTAGGGTACTTCCTAACTTCCCAGCGAATACTACTTTTAAGAGGCTTAAGTCTTTTAAGAACTTCCTGGTTGGCTTAAACGCTACAAGTAACTCTGTAGAAATGCCGCAGATGGTCTGGTGGAGTACCTCGGCTGATGCTGGTGGTGTACCCGCTTCTTGGGACCCAACGGACCCTACTAAAGATGCTGGTCAGAACACCTTGGCTGATACCAATGGTGCTATCGTGGATGGTGTGAAGCTTCGTGACTCCTTCATCATCTACAAGGAAGACTCTGTATACTCCATGCGGTATATCGGTGGATTGTTCATCTTCCAATTCCAGCAGCTGTTTAACGACGTAGGTATCCTCGGACCCAACTGTGCAGTAGAGTTCGATGGTAACCACTTTGTAGTAGGTCACGGTGATGTATATGTCCACAACGGTGTGCAGAAGCAGTCTGTTATTGATGCTCAGGTCCGTAAGTTCTTCTTCTCGGATATTAACCCTGACAACTATCAACGGACCTTCGTACTTGCAGACCACGTGAATACTGAAATGTGGGTATGCTACTCTTCCACTAGGTCTGAGCCAGGTAAGCACTGCGACAGGGCTATCATCTGGAACTGGAAGGAAAACACTTGGAGTATCCGAGACCTTCCCAACGTTCTCAGTGGAGCCTACGGGATCATCGATCCTAAGGTGTCTAACCTCTGGGATGACGACCCCAACCCCTGGGATACTGATACTTCGGTCTGGGGTGAAGGCTCTTATAACCCAGCAAAGTCCAGTATGATCTTCTCGTCTTTCCAGGATAAGAAGTTGTTCCTCTTCGGTAATAACTCTACATTCTCTGGGCAGAACTTCGTCAGTACCCTTGAGAGATCCGATATCTATCTCGGGGATGATCGAATGATGAAGACAGTGAGTGCCATCATTCCACACATTACTGGTAACGGTACTTGTAACATCTGGGTGGGTAACGCTCAGGTACAAGGTTCTGGTATTCGATGGAAAGGCCCTTACCCATACCGGATTGGTCAGGACTATAAGATTGACACTAAACATGTGGGCCGGTATATAGCCTTGAAGTTCGACTTCTCTTCGGAGGGGGACTGGTACTTCAATGGGTACACTATTGAAATGGCCCCGAAGGCAGGTATGCGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cd9c377fff8fe366536f16d73f8ea960866ca7b471d7076b7df4479ac5ba9495
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8943
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Pseudomonas phage Arefeen1 Haider,A., Khan,T., Rahman,S., Moon,S.B., Faysal,N.I., Parvez,M.M.H., Jubair,M. and Rahman,M. 2024-01-17 — GenBank