Protein

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Genbank accession
YP_009811906.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MGLISQSIKNLKSGISQQPDILRFPEQGEAQVNGWSSETKGLMKRPPTIFDRALDVSSSVGAKPLVHAINRDENEKYHIIFTGSGIQALTMKGERVPVNIDAGMQSYITTPNPRDDLRMVTVADYTFITNTNVVVRSANAINDPGFNELNDALVYVKGGQYGRTFTVIINGNVGSFTTPDGVGEDGREVAAMVKQTDAQYIVQRLIESLRAQSGLAGWTFGEGAGFIHCIAPNNGSITEITVRDGFAGQLASAVTHQVQSFSKLPLEAPNNYIVKVVGDTSKSTDAFYVRFDARAKIWKEVLGWKSQARIDANTMPHVLIRQADGSFRFTTYSWWDKTCGDDSTNPFPSFVDSTIRDIFFFRNRLGFLSGENIILSRTGGYSRFFPASVANLSDDDPIDVAVSHNRISVLKYAVPFSEQLLLWSDSAQFVLSASDSVLSAKSVSLDLSTEFDVSWRARPCGLGRGVYYTSPRAAYSTINRYYAVQDVSDVKNSEDITSHCPSYIENGVFSIQGSTTENYVSVLTEGAKNRIYMYKFLYLDETVRQQSWSHWEFPADVEILAATPIGSTLYILARNAVHFYACHVNFTKDTIDFVGEPYQLYMDLKTPYTIPAGNYDADKYRTKISFGDVYKMLIRYGTIMLVDTTGATYYFKAPNADGRWPGDNPELWMDGDWSNKQVFIGRAIPFYYQFSKFLIKTTDQNGFVQTQDLGRLQLRRSWLNYVESGSFDVEVTNASRTFTYNMTGKKLGDRHMVLGNLNVATGQFRFPCPGEANSLTVAIRSEAPTALNVVGCGWEGNFINRAQGI
Physico‐chemical
properties
protein length:805 AA
molecular weight: 89640,72560 Da
isoelectric point:5,96954
aromaticity:0,11801
hydropathy:-0,24335

Domains

Domains [InterPro]
IPR058003
TTP
1–805
IPR058003
YP_009811906.1
1 805
Architecture
TTP
TTP 1-805
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811906.1
1 805
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9846
Central domain 140 338 200 0,2364
C-terminal 339 805 466 0,2779
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-338
C-terminal
339-805

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage Katbat
[NCBI] 		2320191 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Aarhusvirus
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811906.1 [NCBI]
Genbank nucleotide accession
NC_048057 [NCBI]
CDS location
range 23670 -> 26087
strand +
CDS
ATGGGCCTTATTTCACAGTCAATTAAAAACCTTAAGTCTGGCATTAGTCAGCAGCCGGATATCCTTCGGTTCCCAGAGCAGGGAGAAGCTCAGGTCAATGGGTGGTCAAGTGAGACAAAAGGACTCATGAAGAGACCTCCAACTATCTTTGATAGAGCACTTGACGTTAGTTCATCAGTAGGAGCCAAGCCTTTGGTTCACGCTATCAATCGCGATGAGAACGAAAAGTACCATATCATCTTTACTGGTAGTGGTATTCAGGCACTGACCATGAAGGGTGAGCGTGTTCCTGTTAATATTGATGCAGGAATGCAATCTTATATCACCACTCCAAATCCACGAGATGACCTGAGGATGGTCACCGTGGCGGACTATACGTTCATCACTAACACTAACGTTGTGGTACGGTCAGCTAACGCTATCAATGACCCAGGATTTAATGAGCTTAATGATGCCTTAGTGTATGTCAAAGGTGGTCAATATGGCCGAACCTTTACGGTCATTATTAATGGTAACGTTGGTTCCTTTACGACTCCAGATGGTGTTGGTGAGGATGGTAGAGAGGTAGCAGCAATGGTGAAGCAGACGGATGCTCAGTATATCGTTCAGCGTCTCATTGAGAGCCTAAGAGCACAGTCCGGTCTTGCTGGCTGGACATTTGGAGAGGGCGCGGGATTCATCCACTGCATAGCACCTAACAATGGGTCAATCACAGAGATTACTGTGCGTGATGGCTTTGCGGGGCAGTTGGCTTCCGCTGTGACTCATCAGGTTCAGAGCTTCTCTAAGCTCCCCCTTGAGGCTCCCAATAACTATATCGTCAAGGTTGTTGGAGACACCTCAAAGAGCACTGATGCATTCTACGTTAGGTTTGATGCTCGTGCTAAAATCTGGAAGGAAGTATTAGGGTGGAAGTCTCAGGCTCGCATTGATGCTAACACTATGCCTCACGTTCTTATTCGTCAGGCTGATGGCTCATTTAGATTCACTACGTACTCATGGTGGGATAAGACCTGTGGTGATGATTCGACTAACCCATTTCCAAGCTTTGTGGACAGTACCATTCGTGATATCTTTTTCTTCAGGAACCGCTTAGGGTTCTTGAGCGGTGAGAATATCATCTTGAGTCGTACTGGTGGCTATAGTCGATTCTTCCCGGCCTCAGTGGCTAACCTGTCTGATGATGACCCTATTGATGTGGCTGTATCACATAACCGTATCTCAGTCCTGAAGTACGCAGTGCCATTCTCAGAGCAGCTCTTGCTGTGGTCTGATTCAGCTCAGTTTGTGCTCTCAGCGTCTGACTCAGTGCTGTCCGCTAAGTCTGTCTCACTGGACCTCTCAACGGAGTTCGATGTTAGCTGGAGGGCCAGACCTTGTGGATTAGGACGTGGTGTTTACTATACGAGTCCACGAGCTGCTTACTCTACCATCAACCGTTACTATGCGGTGCAAGATGTGAGTGACGTCAAGAACTCTGAGGATATTACAAGCCACTGTCCGAGCTACATTGAGAACGGGGTGTTCAGTATCCAAGGGTCAACTACTGAGAACTATGTGTCTGTGCTGACTGAGGGCGCTAAGAACCGTATCTACATGTACAAGTTCCTGTATCTGGATGAGACTGTTCGTCAGCAGTCATGGAGTCATTGGGAGTTCCCAGCAGACGTTGAGATTCTTGCAGCTACACCTATTGGCTCAACTCTATATATTCTGGCTCGTAATGCTGTTCACTTCTATGCTTGCCATGTGAACTTCACTAAGGACACTATCGACTTTGTGGGAGAACCTTATCAGCTCTATATGGACCTCAAGACTCCATACACCATTCCAGCAGGTAACTATGATGCTGATAAGTACCGGACCAAGATTTCATTTGGTGACGTCTATAAGATGCTCATTAGGTACGGCACTATTATGTTGGTAGATACCACTGGAGCTACCTATTACTTCAAGGCTCCTAACGCTGATGGCAGATGGCCCGGTGATAACCCTGAGTTATGGATGGATGGTGATTGGTCAAACAAGCAAGTGTTCATTGGGAGGGCCATTCCGTTCTATTATCAGTTCTCTAAGTTCCTCATTAAGACAACTGACCAGAATGGATTCGTTCAGACGCAGGATTTAGGACGCCTACAGCTTCGGCGCTCATGGCTGAACTATGTGGAGTCAGGTAGCTTTGACGTTGAGGTTACCAATGCATCACGGACGTTCACCTACAATATGACCGGTAAGAAACTTGGAGACCGACACATGGTCTTAGGTAATCTTAATGTTGCCACAGGTCAGTTCAGGTTCCCTTGTCCGGGTGAGGCTAACAGTCTTACTGTGGCTATCCGCTCAGAGGCCCCTACAGCTCTAAATGTGGTTGGTTGTGGCTGGGAAGGTAACTTTATCAACAGAGCACAAGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
35621f46ef50caefb39e375a77ba6f454382dd6ddec72f6f04e4296dbf77b755
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2913
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SRE bacteriophages Carstens,A.B., Djurhuus,A.M., Kot,W. and Hansen,L.H. 2015-08-27 — GenBank