Protein

View in Explore
Genbank accession
QPZ53536.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,57
Protein sequence
MAIIKPNNNTISAITALPAAIKTGGLVHISTTNISSGDASVELTFDSDYDNYRIICSNLVPNTSGGGTSISVILKRSGQGSYDTSANNYRNNGYDMSSHSNTMNGQGNENLSAGQLVGWNMNNTQYNTSYNIIEIGGVHETTYHLFDCFSQQLQRGSDTDDAAMVHYHFAHTQAAALTNIKILPASGNFKSGKILFYGYKE
Physico‐chemical
properties
protein length:201 AA
molecular weight: 21706,65610 Da
isoelectric point:5,92435
aromaticity:0,08955
hydropathy:-0,36866

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPZ53536.1
1 201
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0022
Central domain 11 190 181 0,0012
C-terminal 191 201 10 0,9984
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-190
C-terminal
191-201

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC035P
[NCBI] 		2796521 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPZ53536.1 [NCBI]
Genbank nucleotide accession
MW273923.1 [NCBI]
CDS location
range 13334 -> 13939
strand -
CDS
ATGGCAATAATTAAACCAAATAACAATACAATATCTGCGATAACAGCTCTACCAGCAGCTATTAAAACTGGTGGATTAGTTCATATATCAACAACAAATATTTCTTCTGGAGATGCATCAGTAGAATTAACTTTTGATTCTGATTATGATAACTACAGAATTATTTGCTCTAATTTAGTTCCTAATACAAGTGGTGGAGGAACTTCTATAAGTGTTATTTTAAAACGATCTGGTCAAGGATCTTATGATACATCAGCTAATAATTATCGGAATAATGGATACGATATGTCATCACATTCTAATACAATGAATGGACAAGGTAATGAAAATTTAAGCGCTGGTCAATTAGTTGGTTGGAATATGAATAACACTCAATACAACACAAGTTATAATATTATTGAAATTGGTGGAGTACATGAAACTACTTATCATCTTTTTGATTGTTTTTCACAACAATTACAAAGAGGTAGTGATACAGATGATGCAGCTATGGTACATTATCATTTTGCTCATACACAAGCAGCAGCATTAACAAATATAAAAATATTACCTGCTTCTGGAAACTTTAAATCAGGTAAAATTTTATTTTATGGATACAAGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
19367cc92ae82bf9f01eb2372930735f3d374e9640dfd62611c6839a08733e7b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7846
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages Du,S., Qin,F., Zhang,Z. and Zhao,Y. — — GenBank