Protein

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Genbank accession
YP_008859596.1 [GenBank]
Protein name
phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,55
Protein sequence
MIEPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKALSAQLEVARIDGMNQTKSFVTSSVVDAKEDINRTVNARIAGARFIPKVFANADKLKRVYPKGQDGIFVVADTGHMWLFVNGAWKDCGVYQTPVQKNQTFTFQPSKDGFPNYDTATRKLDFRCITDSAQITLPSGDAYRIPQYTVVDVNWEFTTGVIIFDTNTLSVISQSPYIPINANQYVLASYRRYPAEGDRLTWNGVLAQSLLVNGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPHNATVALDFSRGVTSFDILIDMKTGEVSTNDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGIIPIAHRGLNSIAPEESLEAYSLAVRSGYKDIECDIYFTEDGIPVLHHDSTINNIARNSDGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKQHYTDEQCQVLLDIVSKYRMANKVGWQAFDHSSLDYIASHDENAQLELLAGSITDDLIADGKKMLNGKRKVVLSVGQGVTQRLVDQAHSEGFDVYVWTVDDINGAKKLINMGVDGIMTNGYIDLPNLLSNEYDLQVSNSPAVDLVTNLTWYKNTYINGKGYIYNLIDGMKDGEERTFAPASGENWFTAIVNLKKNTYTLSFDAKSTVNNDNLTTLMRHVEMGDNNFNCVTAINGTPVNPSSWGDNDLKLSDSYTRYSVTYTVNPDNKQFQIGFRASSSTGTVSIKNIRLTAGTDNKWGATKCMMAYLDANQGETYYARELEEVSWLNTPMIVTDDNLDSVPSTVITDGENHTFKITIPSGGTKLFLNSNETLVPTVFKQSASSGI
Physico‐chemical
properties
protein length:878 AA
molecular weight: 97726,76000 Da
isoelectric point:5,14617
aromaticity:0,09226
hydropathy:-0,33314

Domains

Domains [InterPro]
DC_0719
STR
18–375
DC_0719 IPR017946 DC_1520 G3DSA:2.60.120.260 DC_1292
IPR017946
STR
369–621
IPR017946 IPR008979
PTHR46211
Unmapped
371–614
PTHR46211
IPR030395
ENZ
376–621
IPR030395
IPR017946
STR
378–612
IPR017946
cd08556
ENZ
379–612
cd08556
IPR030395
ENZ
381–612
IPR030395
PS50007
ENZ
385–427
PS50007
YP_008859596.1
1 878
Architecture
STR
RBD
STR 18-808 | RBD 812-878
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008859596.1
1 878
Domain Start End Length (AA) Confidence
N-terminal 1 370 370 0,9471
Central domain 371 679 310 0,8042
C-terminal 680 878 198 0,2096
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-370
Central
371-679
C-terminal
680-878

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage LL-Ku
[NCBI] 		2892343 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008859596.1 [NCBI]
Genbank nucleotide accession
NC_022989 [NCBI]
CDS location
range 13497 -> 16133
strand +
CDS
ATGATCGAACCAGAAGTTAAACTTTTAATGTTGAAGGGCGACAAAGGTGATGGCCTTTCAGACGATGACATGCACAAAGTTGAGTCGTTAATTGACTCCAATGTTGACGAGGCAAAAGGAAGTCTCAGCAAAGCATTAAGCGCACAGCTTGAAGTTGCGAGAATTGACGGCATGAACCAAACCAAGTCGTTTGTCACTTCCAGCGTGGTTGATGCGAAGGAAGACATTAACAGAACAGTAAATGCGAGAATTGCGGGTGCGAGATTTATCCCGAAGGTATTCGCCAACGCTGACAAGCTGAAAAGAGTTTATCCTAAAGGACAAGATGGCATTTTCGTTGTAGCGGATACCGGGCACATGTGGTTATTCGTTAACGGCGCTTGGAAAGATTGTGGAGTATATCAAACTCCTGTTCAAAAAAATCAAACGTTTACATTCCAACCTTCTAAGGACGGCTTCCCGAATTACGATACGGCGACACGCAAACTTGACTTCAGATGTATTACAGACAGCGCACAGATCACGCTTCCAAGCGGTGATGCCTATAGAATTCCTCAGTACACGGTAGTAGACGTTAACTGGGAATTTACCACGGGTGTCATTATCTTTGATACGAATACATTGTCCGTTATTTCACAGTCTCCGTATATTCCCATCAACGCAAATCAGTACGTCTTGGCTAGTTATAGAAGATACCCAGCTGAAGGAGACCGACTTACTTGGAACGGTGTTTTAGCACAAAGCTTGCTAGTTAATGGGGAGACCTACATGGAGCAGAACGTTCAGTTCGTTCCATCAAAAGACGGCTTACCATACTACGATAGCAAGAGGAAGATCATTAACTTTAATTGTCTTACCGACCAAGCCTACGTCTCTTACCAAAATCGCAATTATACGTTGCCACATAATGCTACTGTCGCTCTTGACTTCTCCCGTGGTGTAACTTCCTTCGACATCTTAATTGACATGAAGACGGGGGAGGTCAGCACCAATGACAAGTATCGTTTGTTAACGCCAAACATGGACAAGGTCTCATTTGCAACCGTTAGACTTTTGAATAACGGCAAAGTTGCGATTGAAGGCATTAAATTGCTAGATGAGGTTAGCCCTAAGAATAGCACCGGGATCATTCCAATCGCACACCGTGGTCTTAATTCGATTGCTCCGGAAGAGAGCTTGGAGGCCTATTCTTTGGCCGTAAGAAGCGGCTACAAAGATATTGAGTGCGACATTTACTTTACTGAAGACGGCATTCCTGTTTTGCACCATGACTCTACCATTAACAATATTGCTCGCAATTCAGATGGTACAGAGTTGACGCAACCAGTAAAAATTGGCGAACGAATGTTAGTAGAATTAAACGCCTACGACTACGGGATTTATAAGTCTGAGATCTTCAAAGGCCTCAATATTTGCACATTTGAAGACATCATCAAGTTCGCTCGTAGAACCGGGGCAAGAGTTCATGCTGAGCTGAAGCAACATTATACCGATGAACAATGCCAAGTGCTTCTAGACATCGTTTCTAAGTATAGAATGGCGAACAAGGTTGGGTGGCAAGCATTTGATCATTCCAGCTTGGATTATATTGCTAGTCATGACGAAAATGCTCAGTTGGAGTTGCTAGCTGGGAGCATTACCGATGATTTAATTGCGGACGGCAAAAAGATGCTTAATGGCAAGAGAAAAGTCGTTCTTAGTGTAGGACAAGGCGTCACGCAACGATTAGTTGACCAAGCTCATTCCGAAGGGTTCGATGTTTACGTTTGGACTGTAGATGACATTAATGGGGCTAAGAAGTTGATAAACATGGGCGTAGACGGGATCATGACCAACGGCTACATTGATTTGCCGAATTTGCTGAGTAACGAATACGACTTGCAAGTTTCTAATTCTCCTGCGGTTGATTTAGTAACTAATTTGACATGGTACAAGAACACGTACATTAACGGTAAGGGCTACATTTACAATCTGATTGATGGTATGAAAGACGGAGAAGAGCGCACATTTGCCCCTGCGTCTGGTGAAAACTGGTTTACCGCTATTGTTAATCTTAAAAAGAACACATACACTCTCTCCTTTGACGCAAAATCAACGGTAAACAATGACAACCTTACCACTCTAATGCGACACGTTGAGATGGGGGACAACAATTTTAATTGCGTAACTGCGATTAATGGAACTCCAGTCAATCCTTCAAGTTGGGGGGACAATGACTTAAAATTGTCGGATAGTTACACTCGCTACTCGGTAACGTATACTGTTAATCCCGACAACAAGCAATTCCAAATTGGATTTAGAGCAAGCTCCTCAACGGGCACAGTAAGCATCAAAAATATTCGGCTTACGGCAGGAACGGATAATAAATGGGGCGCAACGAAGTGCATGATGGCATATTTAGACGCTAATCAAGGTGAGACGTACTATGCAAGGGAATTAGAAGAAGTGTCATGGCTGAATACACCAATGATAGTTACAGACGACAATCTTGATTCCGTTCCATCAACCGTAATTACTGACGGAGAAAACCATACGTTTAAGATCACAATTCCAAGTGGAGGCACGAAGCTTTTCTTAAACTCCAATGAAACTCTCGTTCCAACTGTATTCAAGCAATCCGCTTCAAGCGGCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a09d160c1617e7f2b508f263dcddd90b861fbe1c7223cfc04bceec6525750550
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3044
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50