Protein

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Genbank accession
QJT70046.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,80
Protein sequence
MTVVAQGYIGRNPADSSVIIARQTYRPTGVQTDFTFSSGYTVGYIDAYVNGVKLIEGDDFEAGNTSTVGLSSAAQSGDVVQLVAYKAFNIGNVTDATGGFTVGNDLTVNGTLFVGTAITANAGVISATQFVGDGSNLTGLANTDIISAQNFTLSGVGTFSSDIDVDGHTELDNLNVTGVATFSGPVSIAGTLSYEDVTNVDSVGLATFQAGIEIDDSITHLGDTNTKIRFPAVDTFTVETAGNERVRVTSGGSVGINTASPDRVLHVFSTNGTVAHFESSNANTISQIVFEGLGASAPPNLGATGEHLHFTTNNLERVRVTSGGDVGIGTVTPTDPVNSGNSAKLAVGIVTANEYFGDGSNLTGISVGLTTEDQNDSNAVITLDLTAAQDHRVVATGICTISVTNGSEADSHTVRIVNSGVSTVGFSTYFLFPSGTTPDLPTADGAISLISFTVHRVGVAGTQLLAGASLNFS
Physico‐chemical
properties
protein length:473 AA
molecular weight: 48325,38640 Da
isoelectric point:4,27289
aromaticity:0,06765
hydropathy:0,12664

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJT70046.1
1 473
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9845
Central domain 144 342 200 0,1980
C-terminal 343 473 130 0,9444
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-342
C-terminal
343-473

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage SynMITS9220M01
[NCBI] 		2736186 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MIT S9220
[NCBI] 		166309 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJT70046.1 [NCBI]
Genbank nucleotide accession
MT408532.1 [NCBI]
CDS location
range 30372 -> 31793
strand +
CDS
ATGACAGTAGTAGCACAGGGTTATATTGGAAGAAATCCGGCAGATTCATCTGTCATCATTGCGAGACAGACTTACAGACCTACTGGAGTACAAACAGATTTTACATTTTCATCTGGATATACAGTTGGTTATATTGATGCATATGTAAATGGCGTAAAATTAATTGAGGGCGATGACTTTGAGGCAGGTAATACCTCAACGGTTGGATTATCAAGTGCTGCTCAAAGCGGTGATGTTGTTCAGTTAGTCGCATATAAAGCATTTAATATTGGTAATGTTACTGATGCAACTGGCGGTTTTACAGTTGGTAATGACCTAACTGTCAACGGCACTCTGTTTGTAGGCACAGCAATCACTGCCAATGCTGGTGTAATAAGTGCTACTCAGTTTGTTGGTGATGGTTCTAATTTAACTGGTCTTGCTAACACCGATATCATCAGTGCTCAGAACTTCACTCTATCTGGTGTTGGAACATTCTCAAGTGATATAGATGTAGACGGACATACAGAATTAGATAATTTAAATGTAACTGGTGTTGCAACTTTCTCTGGGCCTGTATCAATTGCTGGGACATTATCATATGAAGATGTAACCAACGTAGATTCGGTTGGTTTGGCAACATTCCAAGCAGGGATAGAGATAGATGATAGTATTACACACTTAGGAGATACAAATACTAAGATCAGATTCCCTGCTGTTGACACATTTACAGTAGAAACTGCTGGTAATGAGAGAGTTCGTGTAACTTCTGGTGGTAGTGTTGGTATCAATACTGCCAGTCCAGATAGAGTATTACATGTTTTCTCAACAAATGGAACTGTTGCACACTTTGAGAGTAGCAATGCTAACACAATATCACAGATAGTATTTGAGGGACTTGGTGCATCAGCACCTCCAAACTTAGGAGCAACAGGTGAGCATTTACATTTTACAACTAATAATTTAGAGAGAGTTCGTGTAACTTCTGGTGGTGATGTTGGCATCGGAACTGTTACCCCAACTGATCCTGTAAATTCGGGCAACTCTGCTAAGTTAGCAGTTGGTATTGTTACCGCAAACGAATACTTTGGTGATGGTTCTAATTTAACTGGTATTTCAGTTGGTTTGACCACTGAAGATCAAAATGATTCAAACGCAGTTATAACCCTTGACCTTACAGCAGCACAAGATCATAGAGTAGTAGCAACTGGTATTTGTACAATCTCTGTTACCAACGGATCAGAAGCAGATAGTCACACAGTTAGAATTGTGAACTCTGGTGTTTCTACAGTTGGATTCAGCACATATTTCTTATTCCCATCAGGTACTACACCAGATCTACCAACTGCAGATGGTGCAATAAGTTTGATCTCTTTCACAGTCCATAGAGTAGGAGTAGCAGGAACGCAATTACTTGCCGGTGCTTCACTGAATTTTAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0651785190e5007f497566c817636e4eb69b361f2931184657e1ad3869ff89ce
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7504
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Synechococcus sp. MIT S9220 and co-cultured Thalassospira bacterium and cyanophage Ahlgren,N.A. and Belisle,B.S. 2020-07-23 — GenBank