Protein

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Genbank accession
YP_009286845.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTEHKIILSTTEPNSNIGIIKLRHADVNSQAIVAQIVENGQPKNFEGLQPYFCLMAQEVTGQGVSEESVVSFDAKNGTLKYVASDNALQMVGHNEAYFSFRKQEDGRWIEQFSTRTFHYIVEKSIYSQPFKDSNYWWTFKELNRIFNQYIEDGKTSWEEFVKSNREIIESIDPGGQVLSELIRSRKPEDAASAYPDLPTRLDKQIGKNTDFRSFESDKSFMTRVYNESAERGVNVKWFGAKGDGVTDDTVAIQSAIDTGFSVFIPPGKYNVKELKGFSSGQIIQGISKVESWGGKNTQNITLLNGIGSADNYVIKNNVWGDGILPNAITVKNLSIEGSKRTNGILVGNSSTIEGVKIANCINGLSNIKVSNVMNCQINGCTNGVMNATDSKITNNFFYFNEVGINFDNSNDNSIVNNKIEWNGIGISLTKATYNLISNNIIDRNTTYGIYTSNAVSTTISGNQFERNLTNHLYLHGSLFNISTNSFFRKNSEDNQSGIVAPDVAIFTKSIENSSITSNLVNGKMFNKTGTDYTSNLSIFANTIDGINPDNITVSIPETTAFHGKDTKIIIPLPNYFDGALNNPYNVEILSQKISFISQKGNFYSNGEIIKSIYMSASGIELTIFNGLSDDLKITGSINVRCSYPSIY
Physico‐chemical
properties
protein length:647 AA
molecular weight: 71675,21160 Da
isoelectric point:5,51414
aromaticity:0,10046
hydropathy:-0,34204

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
1–126
G3DSA:2.60.40.3350 G3DSA:6.10.250.1350 IPR011050 DC_1144
G3DSA:2.60.40.3350
ATT
1–125
G3DSA:2.60.40.3350 G3DSA:6.10.250.1350 IPR012334
G3DSA:2.60.40.3350:FF:000001
Unmapped
1–126
G3DSA:2.60.40.3350:FF:000001 IPR012334
IPR018913
ATT
3–148
IPR018913 IPR006626 IPR039448
IPR006626
Unmapped
387–408
IPR006626 IPR006626 IPR006626
IPR022441
Unmapped
403–445
IPR022441
IPR022441
Unmapped
425–467
IPR022441
YP_009286845.1
1 647
Architecture
ATT
STR
RBD
ATT 1-192 | STR 229-562 | RBD 563-647
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009286845.1
1 647
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,9954
Central domain 249 553 306 0,9928
C-terminal 554 647 93 0,9794
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-553
C-terminal
554-647

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage 9871
[NCBI] 		1814957 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus thermophilus
[NCBI] 		1308 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009286845.1 [NCBI]
Genbank nucleotide accession
NC_031069 [NCBI]
CDS location
range 15181 -> 17124
strand +
CDS
ATGACAGAACATAAGATAATTTTAAGTACCACAGAACCTAATAGCAATATTGGCATTATTAAGCTAAGACATGCGGATGTCAATAGTCAAGCAATTGTTGCTCAAATCGTAGAGAACGGTCAGCCCAAGAACTTTGAAGGCTTACAGCCTTACTTTTGTTTAATGGCACAAGAAGTCACAGGTCAAGGAGTGTCAGAAGAAAGTGTTGTCTCCTTTGATGCAAAAAATGGAACACTGAAATATGTTGCCAGTGATAATGCTTTGCAAATGGTTGGACATAATGAAGCTTATTTTAGCTTTAGAAAACAAGAAGACGGGCGGTGGATTGAGCAATTCTCTACTCGGACATTTCACTATATTGTTGAGAAATCTATTTACTCACAACCCTTTAAAGACTCGAATTACTGGTGGACATTCAAAGAGTTAAATCGAATCTTCAACCAATATATTGAAGATGGTAAAACTAGCTGGGAAGAATTTGTGAAATCCAACCGTGAAATTATTGAATCCATTGATCCAGGCGGCCAGGTTCTTAGCGAGTTGATAAGGTCAAGGAAACCGGAAGATGCTGCTTCGGCATATCCAGACCTGCCGACTAGGCTAGATAAACAAATCGGGAAAAATACTGATTTTAGGTCATTCGAATCGGATAAATCGTTCATGACTAGAGTTTATAACGAATCTGCTGAACGAGGAGTTAATGTCAAATGGTTTGGAGCTAAAGGAGACGGAGTAACTGATGATACTGTTGCGATACAAAGCGCTATTGATACAGGTTTTTCAGTTTTCATACCGCCCGGTAAGTATAATGTAAAAGAATTGAAAGGTTTTTCATCAGGACAAATCATACAAGGAATTAGTAAGGTTGAATCTTGGGGAGGAAAAAACACACAAAATATAACGCTACTTAATGGAATAGGTTCTGCAGACAACTATGTGATAAAGAATAACGTTTGGGGAGATGGTATTCTGCCCAACGCTATTACCGTAAAGAATTTATCCATAGAAGGTAGTAAGAGAACAAATGGAATACTTGTCGGAAACTCTAGTACTATTGAGGGAGTGAAAATCGCAAATTGTATTAATGGGCTATCTAACATCAAAGTGTCAAATGTTATGAATTGTCAAATTAACGGTTGTACTAACGGAGTAATGAATGCCACGGATTCAAAGATAACTAATAACTTTTTCTATTTTAATGAAGTCGGCATAAATTTTGATAATTCCAATGATAACAGTATTGTGAATAATAAAATAGAGTGGAATGGAATAGGAATATCCTTAACGAAAGCGACTTACAACTTAATTAGTAATAACATTATTGATAGAAACACTACTTATGGAATATATACGTCTAATGCGGTTAGTACAACTATTTCAGGTAATCAGTTTGAAAGAAATTTAACAAATCATCTTTACTTACATGGTTCTCTATTTAATATTTCTACAAATTCTTTTTTTAGAAAAAATTCGGAAGATAACCAATCAGGAATAGTCGCTCCTGATGTAGCTATTTTCACTAAGTCTATAGAAAATTCTTCAATAACAAGTAATCTTGTTAATGGTAAAATGTTCAACAAGACAGGTACAGACTATACCTCTAATCTTAGCATCTTTGCCAATACCATAGATGGAATAAATCCTGATAATATAACTGTATCCATTCCAGAAACAACTGCCTTTCATGGTAAAGATACAAAGATAATTATTCCTCTTCCAAATTATTTTGATGGTGCATTAAACAATCCATATAATGTAGAAATCCTCTCACAAAAAATATCGTTCATCTCACAAAAAGGGAACTTTTACTCAAACGGAGAAATCATAAAGAGCATTTATATGTCCGCAAGTGGTATTGAGTTAACAATTTTCAACGGATTAAGCGATGATTTGAAAATAACAGGGTCAATAAATGTAAGATGTTCATATCCAAGTATATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0c900c7532fa1fc3cc43e7d5af3d66c1e0618114815d1e30d745be9c09255f56
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7699
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50