Protein

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Genbank accession
YP_010761398.1 [GenBank]
Protein name
major tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,52
Protein sequence
MHLPNGSQIFVENMRGESKDATAITNATKPVFTVAAGGTDFAKGDYIIVTAASWGKMIDRVLRVTESEETSVTVEGIDTSDTNVFPAGNVTATFAKITGWTEIPCVQDLGQDGGEQQYYTYQCLADDREQQLPTYKSAVSLTYSFAHEYDNPIYPLLRKADESGDVRALRMYVPKAKEMRCWAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFLPASVE
Physico‐chemical
properties
protein length:220 AA
molecular weight: 24219,92410 Da
isoelectric point:4,74147
aromaticity:0,09545
hydropathy:-0,25318

Domains

Domains [InterPro]
DC_0037
ATT
1–51
DC_0037 IPR014918
YP_010761398.1
1 220
Architecture
ATT
TAS
ATT 1-51 | TAS 53-215 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010761398.1
1 220
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,9627
Central domain 15 209 196 0,1260
C-terminal 210 220 10 0,6629
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-209
C-terminal
210-220

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vc1
[NCBI] 		1480731 Uroviricota > Caudoviricetes > Drexlerviridae > Jhansiroadvirus gwaliVC1 >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010761398.1 [NCBI]
Genbank nucleotide accession
NC_054898 [NCBI]
CDS location
range 8699 -> 9361
strand +
CDS
ATGCACTTACCGAATGGATCGCAAATTTTCGTCGAGAACATGCGCGGCGAATCAAAAGACGCAACGGCGATCACCAACGCAACCAAGCCAGTGTTTACCGTTGCCGCTGGCGGCACTGACTTTGCAAAAGGTGATTATATTATTGTCACCGCCGCAAGCTGGGGTAAGATGATTGATCGCGTTCTGCGTGTTACCGAATCGGAGGAAACTAGCGTTACTGTTGAAGGTATCGACACCAGTGACACAAACGTATTTCCGGCTGGAAACGTAACCGCGACTTTTGCAAAAATCACTGGCTGGACTGAGATCCCGTGTGTGCAGGACTTGGGGCAGGACGGCGGCGAGCAACAGTATTACACTTATCAGTGTTTGGCCGACGACCGGGAGCAGCAGTTACCGACTTATAAGAGCGCGGTTTCTCTCACCTACTCTTTCGCGCACGAATACGATAACCCGATTTATCCGCTGTTGCGTAAAGCTGACGAATCCGGCGATGTTCGCGCGTTGCGCATGTACGTACCGAAAGCGAAAGAAATGCGTTGCTGGGCTGGTGTTCTTTCTTTCAACGAGATCCCACAGACCGCAGTTAACGAAATGGAAACTGTTTCTCTGTCTGTATCTCTGAAAGGGCGTTTCACCTTCCTTCCGGCTTCCGTAGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
465994b810e46b4596a695e5f74b37a5f0b6bbd11b9ec2f910b89f85c5174748
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9559
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50