Protein

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Genbank accession
QJQ82601.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MSTISQRIPNLLLGVSQQPDKLKFPGQVREASNVFPDYALGLLKRPGGKFEAELYDAEARGRWFPILRDENEKYVCQYDTTDGQFRIWSLIDGKPRAVDMGTTAATGQPSGCNITNLKSDLDTYNTAQSTTDTELSDLHTAQSTFQKANDGQTKTKVNLFDVDVTYKNGYYEETLKSGVLERIDNGQRIVKDDSLTGNAKNVAVVAKGGAMPTGYVLGNNRTDDYPWFKRDGYYVYEVEKDVAATHTAAQLTTATTAMGTAQTAYNTAKTTEATEKGDYDAEVTACAIGAANIPTGAYLKDADPEDIEILTINDYTFVLNKNKTAAMKSTTSAAQPNEAFVVIRTVAYNADYKVTVNSTVNTHSTPDTVSGATTDAGTIAAALATAINSMSGITATQVGPGIYISGTSAFTISTSGSSSEEGLFAFQDKINLASRLPNQCENGYIVRVTNSDDVNADDVYVEFKTSNGAARGVGVWEETIAPGLKFEIDETTMPHQLVRQANGVFKYEPVDWTDRLVGDNDTNPIPSFIGKKINNMFFYRNRLGLLSNEAVIMSRAGDYFNFFANSSQVVAADDPIDLQATSVRPVSLNYTLSTSVGLIVFGPNEQFLLSTDADVLSPTTTKINTISTFECDPSVDAVAVGTAQAFISKSNLYSKLFVMLNIQKEAAASIDEATQNVPEYVPSDVDTMVSSPAMSIISLGKAGTDTVYQHRFFIQGDTRVQTWYKWKLTGDLRLQFFDKTTYYAVTSSGSNVYLTSYDLTQASESGYLTLPTGEKTDVCLDMFNINPERSYSSSTKKTTVTLPFDHITGKKLAVVAIGTYIGDAISATSEAEGSVFYFEDSDISSNQVTLNGDYRGRDLVIGYVYDMEVELPTLYATETQGQRSIADNTADLILHRIKVSTGLSGPVTYKVDITGRDSWSNVVNVTLPNTYVLNNVNLAASATHDVPIYQRNENLTIKIIGDTPFPISLLNIVWEGNYNRRFYRRS
Physico‐chemical
properties
protein length:986 AA
molecular weight: 107690,60810 Da
isoelectric point:4,75591
aromaticity:0,09432
hydropathy:-0,28408

Domains

Domains [InterPro]
IPR058003
TTP
1–134
IPR058003 DC_1750 IPR058003
IPR058003
TTP
1–140
IPR058003
QJQ82601.1
1 986
Architecture
TTP
ATT
TTP
TTP 1-139 | ATT 140-294 | TTP 296-984 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJQ82601.1
1 986
Domain Start End Length (AA) Confidence
N-terminal 1 98 98 0,9890
Central domain 99 297 200 0,8569
C-terminal 298 986 688 0,2242
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-98
Central
99-297
C-terminal
298-986

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SBP1
[NCBI] 		2735125 Uroviricota > Caudoviricetes > Autographivirales > Spiovirus > Spiovirus sbp1
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJQ82601.1 [NCBI]
Genbank nucleotide accession
MT424636 [NCBI]
CDS location
range 21332 -> 24292
strand +
CDS
ATGAGTACTATTTCCCAAAGGATTCCTAACTTGCTTCTGGGTGTATCCCAACAACCTGATAAACTTAAGTTTCCGGGTCAAGTTAGAGAAGCTTCTAACGTCTTCCCTGATTATGCGCTCGGACTGCTCAAGCGACCAGGTGGTAAATTTGAAGCAGAACTTTATGATGCCGAAGCACGTGGACGTTGGTTTCCAATCCTTCGGGATGAAAATGAAAAGTATGTCTGTCAGTATGATACCACTGACGGACAGTTCCGTATCTGGAGTTTGATCGATGGAAAACCTCGTGCTGTGGACATGGGTACCACTGCTGCTACTGGACAGCCTAGTGGTTGCAACATCACTAATCTTAAGTCTGATCTAGATACATACAATACAGCACAGTCAACCACTGATACAGAACTATCTGATCTACACACAGCACAGTCTACTTTTCAGAAAGCTAACGACGGTCAAACCAAAACTAAAGTAAACCTGTTTGACGTAGATGTTACGTACAAAAACGGTTACTATGAAGAAACTCTGAAATCTGGTGTCCTTGAGCGTATTGACAACGGTCAACGTATTGTCAAAGATGATAGCCTAACAGGCAATGCAAAAAACGTAGCAGTTGTTGCTAAAGGTGGTGCTATGCCTACAGGCTATGTCTTAGGCAACAATCGTACAGATGACTATCCGTGGTTTAAGCGTGATGGTTATTATGTATATGAGGTAGAAAAAGACGTAGCTGCTACACATACCGCTGCTCAGTTGACTACAGCTACGACTGCTATGGGTACAGCCCAGACTGCTTACAATACTGCTAAGACGACCGAAGCTACTGAAAAAGGTGACTACGATGCTGAGGTCACTGCCTGTGCAATCGGTGCTGCTAACATCCCTACTGGTGCATACCTAAAAGATGCTGATCCTGAGGATATTGAAATCCTTACGATTAACGACTATACGTTTGTCTTGAATAAAAACAAGACTGCGGCTATGAAGTCTACTACATCTGCTGCTCAACCAAACGAAGCGTTTGTGGTTATCCGTACTGTTGCATATAACGCAGACTATAAAGTTACTGTTAACAGCACTGTAAACACACATAGCACTCCTGACACAGTATCAGGTGCTACAACCGATGCAGGTACTATTGCTGCTGCTCTAGCTACAGCTATCAACAGTATGTCTGGTATAACTGCAACACAAGTTGGACCTGGTATTTATATCAGCGGCACCAGTGCATTTACAATTTCTACCTCTGGATCGTCTTCTGAAGAAGGTCTGTTTGCTTTTCAAGATAAAATTAACTTAGCATCACGCCTTCCTAATCAATGTGAAAATGGTTACATTGTTAGAGTTACTAACAGTGACGACGTAAACGCTGACGATGTATATGTAGAATTTAAAACTAGCAACGGTGCTGCACGAGGCGTTGGTGTTTGGGAGGAAACTATTGCTCCTGGTCTTAAATTTGAGATTGATGAGACAACCATGCCTCACCAGCTTGTACGTCAAGCCAACGGTGTTTTTAAATACGAACCTGTTGACTGGACTGACCGTTTAGTAGGTGATAATGACACCAACCCTATTCCTAGTTTTATTGGTAAGAAGATTAACAACATGTTCTTCTACCGTAACCGTCTTGGGTTGCTGTCTAACGAAGCTGTGATCATGAGCCGTGCTGGTGATTACTTTAACTTTTTTGCTAACAGCTCTCAGGTGGTTGCCGCTGACGATCCTATCGACCTTCAAGCTACTTCTGTACGTCCTGTTTCGTTGAACTACACCCTGTCTACCAGCGTTGGTTTGATCGTGTTTGGTCCTAATGAACAGTTCTTACTTTCTACAGATGCTGACGTTTTAAGCCCTACTACCACTAAAATCAATACAATCAGCACGTTTGAATGTGATCCTTCTGTAGACGCTGTGGCTGTCGGTACAGCTCAAGCATTTATTAGTAAATCTAATCTATACAGCAAGCTGTTTGTTATGCTTAACATTCAGAAAGAAGCTGCTGCATCGATTGATGAGGCTACACAAAACGTACCTGAATATGTACCTAGTGATGTTGACACGATGGTATCTTCACCAGCCATGTCGATTATCTCTCTTGGTAAGGCTGGCACTGATACTGTTTATCAACACAGGTTTTTCATTCAAGGCGATACCCGAGTTCAGACCTGGTACAAGTGGAAGCTTACTGGAGACCTGCGGTTGCAGTTCTTTGATAAGACTACGTACTATGCTGTAACCAGTTCTGGTAGTAACGTATATCTGACATCGTATGACCTAACACAGGCTAGTGAATCAGGATACCTGACACTACCTACGGGTGAAAAGACGGATGTATGTTTGGATATGTTTAACATCAATCCAGAAAGATCTTACTCGTCTTCAACAAAGAAGACTACAGTAACACTGCCTTTCGATCACATCACTGGTAAGAAGCTAGCAGTTGTAGCCATCGGTACTTACATTGGTGACGCTATTTCTGCAACCAGTGAAGCCGAGGGTTCTGTCTTCTACTTTGAAGATAGTGATATATCTAGCAACCAAGTGACACTAAACGGTGATTACCGTGGACGTGATTTGGTTATCGGATATGTGTATGATATGGAGGTTGAACTACCTACCCTGTACGCTACAGAAACACAGGGTCAACGTTCTATTGCTGATAACACAGCTGATCTAATCTTGCATCGTATCAAGGTATCTACTGGGCTTAGCGGTCCTGTTACCTACAAGGTTGACATTACTGGTAGGGATAGTTGGAGCAACGTTGTCAACGTTACACTGCCCAACACCTATGTTTTGAACAATGTTAACTTAGCTGCATCTGCTACGCATGATGTACCTATTTACCAACGTAATGAAAACCTGACTATTAAAATTATTGGAGACACTCCTTTCCCGATCAGCTTGCTGAACATTGTTTGGGAAGGTAACTACAACCGTCGATTCTACCGCCGATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e1236d2bc1e4cf0566b9856f6821a9b90ae377eb826aa3249b00845621cdd289
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2899
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Programmed transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection Huang,S. 2020-12-30 — GenBank