Protein

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Genbank accession
ADQ83187.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALISQSVKNLKGGISQQPDILRFPEQGSEQINGWSSETEGLQKRPPFVFTKTIGDQNALGAKPLVHLINRDSAEQYYVVFTGQGVRVFDLDGKEYSVKGDLSYVKVGNPRDDLRMVTVADYTFIVNRNMVVRPDTTPLYTLKENGDCLINIRGGMYGRTLAFTINNTKIAYEIAHGDVPEHSKQTDAQWLVKKLAGLARLNVAFKGWTFTEGPGYIHVIAPSNSQINSLSTEDGYADQLMNAVMHTSQSFSRLPVEAPNGYTVKIVGDTSKTSDMFYVQYDNLKKVWKEVAGWGVQKGLNGDTMPHALVRQADGSFQMQALPWAQRTCGDMDTNPTPSIVDQTINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLSAQGILSPKSVELNLTTEFDVSDRARPFGVGRGVYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHVPSYIPNGVFSIRGSSTENFISVLSSNAPSRIFLYKFLYLNEEIAQQSWSHWELGSNVTVLACDSIGSTMYLVLRNQSHTWMCRAHFTKNSIDFPDEPYRLYIDNKVKYVIPEGSYNDDTYATTVKPVDVYGMKYWTGKFYIVASDGLVSWFEPPRGGWPNGVPMLTMSGNREGETIYVGLAISFRYVFSKFLIKKTADDGSIATEDIGRLQLRRAWVNYEDSGAFTVEVENTSRLFSYDMAGARLGSNALRAGGLNVGTGQFRFPVTGNAQLNEVRIISEHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:792 AA
molecular weight: 88216,46680 Da
isoelectric point:6,12340
aromaticity:0,11237
hydropathy:-0,25354

Domains

Domains [InterPro]
IPR058003
TTP
1–792
IPR058003
ADQ83187.1
1 792
Architecture
TTP
TTP 1-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADQ83187.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9936
Central domain 142 343 203 0,1145
C-terminal 344 792 448 0,2266
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-343
C-terminal
344-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage Yep-phi
[NCBI] 		928293 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Berlinvirus
Host Yersinia pestis
[NCBI] 		632 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADQ83187.1 [NCBI]
Genbank nucleotide accession
HQ333270 [NCBI]
CDS location
range 22110 -> 24488
strand +
CDS
ATGGCTCTTATTTCACAATCCGTCAAGAACCTGAAGGGCGGTATCAGTCAACAGCCGGACATCTTAAGGTTCCCCGAACAGGGTTCCGAACAGATTAACGGTTGGTCCTCGGAGACTGAGGGTCTTCAGAAGCGTCCACCTTTTGTCTTCACTAAGACCATTGGAGACCAGAATGCCCTTGGTGCCAAACCTCTAGTTCACCTCATCAACCGTGATAGTGCCGAACAGTATTACGTAGTGTTTACCGGACAGGGTGTTCGTGTGTTCGACCTAGATGGTAAAGAGTATTCTGTGAAGGGTGATTTGTCCTACGTTAAGGTAGGGAACCCTCGAGATGACTTAAGGATGGTCACTGTGGCTGACTACACATTTATCGTTAATCGCAATATGGTTGTGCGCCCAGATACTACCCCTTTGTATACCCTTAAGGAGAATGGAGACTGCTTGATTAACATCCGCGGGGGTATGTATGGTCGTACGTTGGCATTCACTATTAACAACACAAAGATTGCATACGAGATTGCCCATGGGGACGTACCAGAACATTCTAAGCAGACTGACGCACAGTGGCTCGTTAAGAAACTTGCTGGTCTCGCGCGTTTGAATGTTGCCTTTAAGGGCTGGACGTTCACCGAAGGGCCTGGGTACATCCATGTGATTGCTCCAAGTAACAGTCAGATTAACTCACTGTCCACTGAAGATGGCTACGCCGACCAGTTGATGAACGCAGTGATGCACACCAGCCAGTCATTCAGTAGGTTGCCCGTTGAGGCTCCTAATGGATACACGGTGAAGATTGTTGGTGACACCTCTAAGACATCCGATATGTTCTACGTTCAGTACGACAACTTGAAGAAGGTGTGGAAAGAGGTTGCAGGTTGGGGCGTACAGAAGGGACTTAATGGTGACACGATGCCTCATGCTCTTGTACGTCAGGCTGATGGATCATTCCAGATGCAAGCACTACCGTGGGCGCAACGTACCTGTGGTGACATGGACACTAACCCTACTCCGTCTATTGTTGACCAGACGATTAACGATGTGTTCTTCTTTCGTAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCCCGTACCTCTAAGTATTTCTCATTGTTCCCTGCATCAGTAGCTAACCTGTCCGACGATGACCCTATCGACGTGGCTGTGTCTCATAACCGAATCTCTATCCTGAAGTACGCTGTGCCGTTCTCTGAGGAGTTGCTCCTATGGTCAGACCAAGCACAGTTCGTGTTGTCCGCTCAAGGTATACTCTCACCTAAGTCAGTAGAGTTGAACCTCACGACCGAGTTCGATGTGTCAGACCGAGCGAGGCCTTTTGGCGTTGGACGTGGTGTGTACTTTGCGTCACCTCGTGCTTCCTATACGTCACTTAACCGTTATTATGCGGTACAGGATGTTAGCTCTGTGAAGTCTGCTGAGGATATGAGTGCTCACGTTCCTAGCTACATTCCGAACGGTGTGTTCTCTATACGAGGCTCCAGCACTGAGAACTTCATCTCTGTGTTGTCTTCAAATGCTCCAAGCAGAATCTTCCTCTATAAGTTCCTCTACTTGAACGAAGAGATAGCACAACAGTCGTGGTCACATTGGGAACTAGGAAGTAACGTTACCGTACTGGCCTGTGACTCTATTGGTTCCACCATGTACCTTGTGTTGCGCAATCAGTCACACACTTGGATGTGTCGTGCTCACTTTACGAAGAACAGCATCGACTTCCCTGATGAGCCGTATCGTCTGTACATTGACAATAAGGTGAAGTATGTGATTCCTGAAGGTTCATACAATGATGACACTTACGCTACCACTGTGAAACCTGTAGACGTCTATGGGATGAAATACTGGACCGGTAAGTTCTACATTGTGGCCTCTGATGGACTGGTGTCATGGTTCGAGCCTCCTCGTGGTGGTTGGCCTAATGGTGTACCTATGTTAACAATGAGTGGGAACCGTGAGGGTGAGACAATCTACGTTGGGTTGGCTATCAGCTTCCGCTATGTGTTCTCTAAGTTCCTCATTAAGAAGACCGCTGATGATGGCTCTATAGCTACCGAGGACATTGGTCGTTTACAGTTACGCCGAGCATGGGTGAACTACGAGGACTCTGGTGCATTCACAGTGGAAGTGGAGAACACCTCTCGACTGTTCAGCTATGATATGGCAGGTGCTCGCTTGGGTTCCAATGCGTTACGTGCTGGTGGACTTAATGTTGGTACGGGTCAGTTCCGCTTCCCGGTGACTGGTAATGCACAGTTGAATGAAGTACGTATTATCTCTGAACACACCACACCACTGAACGTTATCGGTTGTGGTTGGGAGGGTAACTACCTTCGTCGTTCTTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c7e9480d6cd8d40bf24a5825f6e7c0c4c9021e9aad683f569d0a468cd97ff7ff
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9062
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome sequence and proteomics of Yersinia pestis phage Yep-phi Zhao,X., Wu,W., Qi,Z., Cui,Y., Yan,Y., Guo,Z., Wang,Z., Wang,H., Deng,H., Xue,Y., Chen,W., Wang,X. and Yang,R. 2011 20943893 GenBank