Protein

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Genbank accession
YP_009594482.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
Protein sequence
MSLAQRLSALAQAIAQDVKNIILNYRLKTDLYEEKTTAVTVAPSTFDQVKQARWLKATWAPSSASNGGVVAADFVDMIFNGANGSVTGGGHYVGRFTYLQAIGGGALDQGFLEEHRVGVRNSTTVNTVIGRKWVIDKNSEASGTIGKLALEVFDDMRADVSYVQRFTREFLDPRMVTLHAGGVIQTGVIIGDETTTVSIADYWSGKSVYLNSASNRTLSVPASITEGFSLKLIQGSLGGKWSITAPGRTILSNTGATATVNAYDIVTLKVYPGGIVWLEFEANPATSYDTSKVVPIINGGTGATSAAAARSNLFDTRLQNFSSLSGGVDQLPYQTGANTWAQTPLTSVGRGVLGGSTVANVLSYLGGVPKSLASNRTVSDPNTVPDECGFYSIGSSPWSNLPAGVDSLNPIGSMLYHHPYDAATAVQMLVVRTSNLMYFRRRAAGSWQAWNRVLSDTQLLGIVAQTGGVPVGSVIERGSNSNGQYVRFADGTQICIISLLGANDRTAGVGYTLTLPVSFTPDWTVGVSVSWVSHATNPSTYNGTRVAYANGNALTFILSENLTTNRLIFTCIGRWF
Physico‐chemical
properties
protein length:576 AA
molecular weight: 61288,23310 Da
isoelectric point:8,57057
aromaticity:0,09028
hydropathy:0,01910

Domains

Domains [InterPro]
DC_1166
STR
17–310
DC_1166 cd19958
DC_0857
STR
247–576
DC_0857
YP_009594482.1
1 576
Architecture
STR
STR 17-576
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage SM1
[NCBI] 		1772332 Uroviricota > Caudoviricetes > Samunavirus >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009594482.1 [NCBI]
Genbank nucleotide accession
NC_041877.1 [NCBI]
CDS location
range 61419 -> 63149
strand +
CDS
ATGAGCCTCGCACAACGTCTATCAGCACTAGCCCAGGCGATAGCTCAGGATGTAAAAAACATCATCCTTAACTATCGTTTGAAGACCGATCTGTACGAGGAGAAGACTACTGCGGTAACAGTGGCACCTTCTACTTTCGACCAAGTTAAGCAGGCTCGATGGCTAAAGGCGACCTGGGCGCCCTCTTCTGCCAGCAATGGAGGGGTAGTAGCTGCTGACTTCGTAGATATGATCTTCAACGGGGCTAACGGAAGCGTAACTGGGGGCGGCCACTACGTTGGCCGCTTTACCTATTTGCAAGCGATTGGCGGCGGCGCGCTCGATCAAGGCTTTCTCGAAGAGCATCGAGTAGGCGTCCGCAACAGCACTACGGTAAACACGGTCATAGGACGTAAGTGGGTTATCGATAAGAACTCGGAAGCTAGCGGTACTATAGGCAAGTTGGCGTTGGAGGTATTCGACGACATGCGCGCCGATGTCAGTTACGTGCAGCGATTCACTCGCGAGTTCTTAGACCCGCGTATGGTTACGTTACATGCTGGCGGGGTAATACAGACTGGAGTCATCATAGGGGACGAAACTACAACAGTCTCCATTGCGGACTATTGGTCAGGTAAGTCTGTCTACCTCAATAGTGCCAGTAATCGAACTCTATCGGTACCTGCCTCGATCACTGAAGGCTTCTCTTTGAAGCTGATCCAGGGATCGTTAGGTGGTAAATGGTCGATCACCGCTCCGGGCCGTACGATTCTGTCTAACACTGGAGCAACAGCCACTGTTAACGCCTACGATATAGTCACCTTGAAGGTCTACCCCGGAGGGATAGTGTGGCTAGAGTTCGAGGCTAATCCGGCCACCAGTTACGACACTTCCAAGGTCGTGCCGATTATTAATGGCGGTACTGGCGCTACGAGTGCCGCTGCCGCGCGGTCGAATCTATTCGATACCCGTTTGCAGAACTTCAGTTCGCTATCGGGTGGCGTTGACCAACTCCCATATCAGACTGGGGCCAATACCTGGGCGCAGACCCCTCTCACCTCGGTAGGGCGGGGCGTTTTAGGTGGAAGTACAGTTGCTAACGTCCTTTCTTACCTTGGCGGCGTACCCAAAAGTCTAGCGTCTAACCGGACGGTCTCCGATCCGAATACTGTGCCGGATGAGTGTGGTTTTTACAGCATAGGTTCGAGCCCGTGGTCTAACTTACCGGCGGGCGTAGACTCTCTGAACCCCATAGGTTCAATGCTGTATCACCATCCGTACGATGCAGCTACCGCAGTTCAAATGTTGGTGGTTCGTACATCTAACTTGATGTACTTCCGACGGCGCGCGGCTGGGTCGTGGCAGGCGTGGAACCGTGTTTTGTCGGATACTCAGCTACTCGGTATTGTCGCCCAGACTGGAGGCGTTCCTGTAGGTTCCGTGATAGAGCGTGGTAGTAACTCTAACGGCCAGTATGTTCGTTTTGCTGATGGGACTCAGATTTGCATAATTAGCTTGCTAGGGGCGAATGACCGGACTGCTGGCGTAGGCTACACGCTCACGTTGCCTGTATCTTTCACTCCAGATTGGACCGTGGGGGTATCGGTGTCCTGGGTGTCGCACGCAACGAACCCGTCAACATACAACGGCACGCGTGTTGCTTATGCTAACGGTAACGCCTTGACGTTTATACTCTCTGAGAACCTGACAACTAACCGATTAATTTTTACCTGCATAGGAAGGTGGTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1b8c0c351efda6b45ef47804d22bb629cc338fb37672c61096eb22ff0cfd3f25
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6674
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In silico genomic study of Pseudomonas phage SM1 Zawawi,N.A.M., Mat-Arip,Y., Wan-Jauhari,W.K., Fauzi,A.A. and Yee,F.J. 2014-03-01 — GenBank