Protein

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Genbank accession
YP_004324161.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,59
Protein sequence
MADYLVTLNDPGSYNVGVDYEVPSKSIQYGNIIIGKTPAQDGTETTFNLNDQGSAYTPNNNQQLIVTKNGLFLDPSNDYNISGDKVVFTTPPAANDDVVIIALAAAADLTRTVNYVIDSGSLPMQPGDKGKLTIDVTGLIENIRVLSDQTGDIVLEIEKCTFADYPNFASITGGSRVQLTNSDKYFDDVLNNWTTTIGAGDILRFTVVSVNNIRRLLISLKLKL
Physico‐chemical
properties
protein length:224 AA
molecular weight: 24273,95760 Da
isoelectric point:4,34514
aromaticity:0,07589
hydropathy:-0,09777

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM7
[NCBI] 		445686 Uroviricota > Caudoviricetes > Pantevenvirales > Lipsvirus > Lipsvirus ssm7
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324161.1 [NCBI]
Genbank nucleotide accession
NC_015287 [NCBI]
CDS location
range 86375 -> 87049
strand +
CDS
ATGGCAGATTACTTAGTCACTCTCAACGATCCTGGCAGTTATAATGTCGGTGTAGACTATGAGGTTCCCTCAAAGTCGATCCAATATGGTAATATCATTATTGGGAAAACACCAGCACAAGATGGTACTGAAACCACATTTAATCTAAATGACCAAGGATCAGCATATACTCCTAACAATAATCAACAACTTATTGTTACTAAAAATGGTCTTTTCCTAGATCCGTCGAATGATTACAATATTTCTGGAGATAAAGTTGTATTTACAACTCCTCCAGCAGCAAATGATGACGTAGTGATCATTGCTCTTGCTGCAGCTGCTGATTTAACACGAACTGTAAACTATGTTATTGATAGCGGCAGTCTTCCAATGCAGCCTGGTGACAAAGGTAAACTTACCATAGATGTCACTGGACTTATCGAAAATATCAGAGTCTTGTCAGATCAGACTGGTGATATTGTTCTTGAAATAGAAAAATGCACTTTCGCAGATTATCCGAATTTCGCTAGTATTACTGGTGGTTCGAGAGTGCAACTAACCAATTCGGATAAATACTTTGATGATGTCCTAAATAATTGGACGACCACTATTGGAGCTGGAGATATTCTTCGTTTTACGGTGGTAAGTGTGAATAATATTAGAAGGTTACTAATCTCTCTAAAATTAAAATTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
42e89c4008865e383dcf2c27b6d0bf5856f781c9e26325d1be339abc953dfe43
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8284
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8109-3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank