Protein

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UniProt accession
A0A2D0VK16 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAYLFRDHYRRDKIVGGFLTALLFANIHRECWVIIGGIMSLTKPTTDKIKHGFTILSEVIESIFKKLMGIPSVTNVVDFGADPTGVVSSKVAIDKAITSAGIGGVVYFPKGIYVTQGNHNLLQGQTLKGYGVTFKSDLSITADSLFNIEQDNISILGNIIIDGGMYEIGDRYPDIITGIRVGSTHQVTNFTCDKVTFIGSVYGLWITSLRDSVISNCYAFRCGNGFGLASNTTGILDINGVYNVKFSKCVAEECGYTFLGTDQSPTTSAKCGFKITDIAIRNLVYEDCVARRNYTHGFNYHGHNYSSVPDGFIQEGIHYIRCISDDNNIPEQYTKESDGNGLSSGFYIGIVGVPVHNITLQDCYASGNNGEALYQASLDSTQPLIGLSISNFCVKGSPRVKTKGIRSNNSIVKLDRVRDLNINGIPLRNVQGLYDYVIYCTKLSGTLSVKGNWDVGAPKLMYANAVNNTKTVIRDITHSYTSSLNTASVIAIELVDFSEIIVDNITLSNKSTTKMSHGIFQRSSSFGITSCKINNTNIFGGTGQFTVGVETTTVGGSKLFQGCTLQNCTNGFAGNNGENAIFIGNHFVTGTVITPLLSFAPSVIKRGNFGLEDS
Physico‐chemical
properties
protein length:614 AA
molecular weight: 66537,69160 Da
isoelectric point:7,50510
aromaticity:0,09609
hydropathy:0,01352

Domains

Domains [InterPro]
IPR011050
STR
69–446
IPR011050
IPR012334
STR
70–429
IPR012334
IPR012334
STR
74–429
IPR012334
IPR024535
ENZ
74–133
IPR024535
A0A2D0VK16
1 614
Architecture
STR
STR 69-446 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A2D0VK16
1 614
Domain Start End Length (AA) Confidence
N-terminal 1 89 89 0,9549
Central domain 90 603 515 0,9940
C-terminal 604 614 10 0,2568
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-89
Central
90-603
C-terminal
604-614

Taxonomy

  Name Taxonomy ID Lineage
Phage Proteus phage PM 116
[NCBI] 		1837877 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Proteus mirabilis
[NCBI] 		584 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098994 symbiont entry into host cell via disruption of host cell envelope Biological Process IEA:UniProtKB-KW (UniProt)
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
7be2e83f4e3109fa3e5ffef1bee2748292f2c3bba334a0c91bb764bb97970df6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8347
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50