Protein

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Genbank accession
YP_010668748.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MFSNAPKATSNDGGVVPGNKPSIGNNDGRKVVHYIEQIFDPDIHPIELMSKYIVPEEGELVVDMPNHVFYEVEHVDRHATWKTTLGPWNPIPEASGNDYTLFPKHEYGFLQGEMALMIDYSVRPPVARVDANCVAPNAAYAHLYNGDVFQDTDIISATYSGVDFIDNKIPVSPVVLDNFENLTIMGANTFSVQRSDKELPNGSRCSLIFKDQAGRPIPPIYPLAVQHCSHLRDHELGTRYVKSIELISPWFTNTSNPKTLFIRINVLLKTVEFRARVHYSDGTSSDPVPVNTFNGNNGFKLLGLDQWKPTVPGQSSDSLVLTYAFAEHEQAYMAQPGQPRHMSEKYTIVAVPGEGTYTPRIYSYPYWDNMNGWKLKHFLTDLDRKYCRDVTDIVTLNESSPAFDGRKYGEEQNLIFNLNMRDVSASYEPWSFMQHTSPTLYNDATAEGRKWDVRHSRGKPPFVSMTVEYIAQAGGGVKAKFAGIADDKEFLDKGYWAFDPLMDPLTEIKAPTPTHFDLVRVNGSVRTGIPIAGWKELPIDAFSLTPGEGLFIRWVRRESDGNELQLGVSAAVSKKVSVFS
Physico‐chemical
properties
protein length:580 AA
molecular weight: 65029,55220 Da
isoelectric point:5,60554
aromaticity:0,11034
hydropathy:-0,37845

Domains

Domains [InterPro]
DC_1319
STR
1–580
DC_1319
YP_010668748.1
1 580
Architecture
STR
STR 1-580
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010668748.1
1 580
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,8635
Central domain 27 225 200 0,8739
C-terminal 226 580 354 0,6060
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-225
C-terminal
226-580

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D3
[NCBI] 		2593327 Uroviricota > Caudoviricetes > Chimalliviridae > Ludhianavirus D3 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010668748.1 [NCBI]
Genbank nucleotide accession
NC_070957 [NCBI]
CDS location
range 260531 -> 262273
strand +
CDS
ATGTTTAGTAACGCACCTAAAGCCACCAGTAATGACGGTGGTGTCGTTCCGGGTAACAAACCCAGCATCGGTAATAATGACGGTCGCAAGGTCGTCCATTATATCGAGCAAATTTTCGATCCCGATATTCACCCCATCGAGCTGATGTCCAAGTACATCGTTCCTGAAGAGGGTGAACTCGTAGTAGACATGCCGAACCATGTTTTCTACGAGGTAGAACATGTGGACCGTCACGCCACTTGGAAAACGACCCTTGGTCCTTGGAACCCGATTCCCGAGGCCAGTGGTAATGACTACACCCTGTTCCCGAAACACGAATACGGTTTCTTGCAGGGTGAAATGGCACTGATGATCGATTACAGTGTCCGTCCTCCTGTGGCTCGGGTCGATGCAAACTGTGTCGCTCCTAATGCAGCATACGCTCATCTCTATAACGGTGATGTGTTCCAGGATACTGACATAATTTCAGCCACTTATTCTGGTGTTGATTTTATCGACAACAAAATCCCGGTATCCCCGGTTGTTCTCGATAACTTCGAAAACCTCACCATCATGGGTGCGAATACGTTCTCTGTCCAACGAAGTGATAAGGAACTCCCTAACGGTTCACGGTGTAGCCTGATCTTCAAGGATCAAGCGGGTCGACCGATCCCACCCATCTATCCGTTGGCTGTTCAGCACTGCTCTCATCTCCGTGACCATGAGCTGGGTACTCGCTACGTTAAGAGCATTGAACTCATCTCTCCATGGTTCACCAATACGTCCAATCCGAAGACCCTGTTTATCAGGATCAACGTATTGCTGAAGACGGTTGAGTTCCGTGCACGAGTTCACTACTCTGACGGTACTTCTTCTGATCCGGTTCCTGTGAATACCTTCAATGGTAATAACGGGTTCAAGCTCTTGGGTCTGGACCAGTGGAAACCGACCGTACCTGGTCAGTCTTCTGACAGTCTGGTTCTGACGTATGCGTTCGCTGAACACGAACAGGCTTACATGGCCCAACCTGGTCAGCCTCGTCATATGTCCGAGAAGTACACCATCGTTGCTGTCCCTGGCGAGGGTACGTACACTCCGCGTATCTACTCCTACCCGTATTGGGATAACATGAACGGTTGGAAGTTGAAACACTTCCTGACTGACCTGGATCGCAAGTACTGTCGTGACGTCACTGACATTGTCACACTCAACGAATCCAGTCCTGCGTTTGATGGCCGTAAGTATGGTGAAGAGCAGAACTTGATCTTCAACCTGAACATGCGTGACGTTTCCGCTAGCTATGAACCCTGGTCGTTCATGCAACACACCTCTCCAACGTTGTACAACGATGCAACAGCGGAAGGACGTAAGTGGGATGTTCGTCATTCTCGGGGTAAACCGCCATTCGTGTCGATGACTGTCGAGTACATTGCTCAAGCTGGTGGCGGTGTTAAGGCCAAGTTCGCCGGGATCGCCGATGACAAAGAGTTCCTTGATAAAGGTTACTGGGCATTCGATCCTCTTATGGATCCGCTCACTGAAATCAAGGCTCCGACTCCGACCCACTTCGATCTCGTTCGGGTCAATGGTTCTGTTCGGACCGGTATTCCTATTGCTGGCTGGAAAGAACTTCCCATCGATGCGTTCAGTCTCACTCCGGGTGAAGGTCTCTTCATTCGTTGGGTCCGTCGTGAATCCGATGGCAATGAACTCCAACTCGGTGTTTCTGCTGCTGTCAGTAAGAAAGTCTCTGTGTTCTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f4a52aad7acfb26cc8259f927bcddb60a7bc1033804d73d0f1606efa197545ac
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3911
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D3 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank