Protein

View in Explore
Genbank accession
YP_010670404.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSEIKVNTLRGLGVSNTGPAISLNSTGTFSFDSGTLFVDSTNNRVGINITNPAYTIDVNGAINVTGQTRISTVNENIEYRSSGQSGNQDYNFNTAGIFYHPSVNGDITARFTNVPTDQNRAYGFCIIFNQGGSARRVNTTIQINGTNYTTRWLGGQSPTITANRPEVFNFSIVNNNGSWLVLGQLSSFN
Physico‐chemical
properties
protein length:189 AA
molecular weight: 20451,18080 Da
isoelectric point:7,89353
aromaticity:0,10053
hydropathy:-0,31746

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010670404.1
1 189
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,8494
Central domain 17 178 163 0,0380
C-terminal 179 189 10 0,9965
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-178
C-terminal
179-189

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H38
[NCBI] 		2783673 Uroviricota > Caudoviricetes > Pantevenvirales > Yellowseavirus > Yellowseavirus thirtyeight
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010670404.1 [NCBI]
Genbank nucleotide accession
NC_070964 [NCBI]
CDS location
range 58864 -> 59433
strand +
CDS
ATGTCTGAGATTAAGGTAAACACTTTAAGAGGATTGGGGGTCTCGAACACAGGTCCAGCAATCTCTCTAAACTCCACAGGTACTTTCAGTTTTGACTCTGGTACTCTGTTTGTTGACTCTACAAATAATCGTGTTGGTATTAACATCACGAACCCTGCTTACACCATTGATGTTAATGGTGCAATCAATGTCACGGGTCAGACTCGTATCTCGACTGTAAACGAGAACATTGAGTATCGTTCAAGTGGTCAATCTGGCAACCAGGATTACAACTTCAACACTGCTGGTATTTTCTATCATCCGTCAGTAAACGGTGATATTACCGCAAGATTTACCAACGTTCCTACAGATCAGAACAGAGCATACGGTTTCTGCATTATCTTCAACCAAGGTGGTTCTGCAAGAAGAGTCAATACTACCATTCAGATTAATGGTACTAACTACACAACTAGATGGTTGGGTGGTCAGTCTCCAACAATCACTGCAAACCGTCCTGAAGTGTTTAACTTTAGTATTGTAAATAATAACGGTTCATGGTTGGTTCTCGGACAACTATCGTCGTTCAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
453a26e778b0a6473ce2d092909a36fffa145cc88abde3e5aedd83c9a3b727a5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7706
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H38 from the Yellow Sea, China Jiang,T. 2019-04-04 — GenBank