Protein

View in Explore
Genbank accession
YP_009097867.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MANNEFMALFGPDSFTANVFSEANAVKYRLVVRGANLSSTLNAIEVSINGADIINRNTQRDRGINLAIIDGTTLALLDYKTFDMYGDPTTNGNALRDYLGSLPANRIVCFYSYDAIGSNANFTAIMRKIGSVAWPEERFFSNDDRRRSSYSAIYSSTMKKICMENFVGGSGSISQDDTRSFVEVVFDEFSDIGVTGIPERMVDDVQTYQNSGSLYGYHGYGSWNIGTDVFRGDIFKVTGDLYCSQELRDAGGDTYLYIWTETAGAQWVASSLLRTTNLTPDTWHSLSIYFTIPQGTENVKMGCQVYHHPSTVNVGLSQCRNVQISKVPREEVNRNGAAIGVNGVRMQTLSEVDTTGTENPIEQLLSLPVSPAGTPSNKTIVSHNFAELDYLVADPTEYTSTDTTQYLVKEWANKQYDFSKVSLSSVGAKPGDVIRVAGQLKRDATAIANNKRAFIIMQFLDANNQYIGAPQPVIIQDVSTVPNVYTFYKSEGVVPDGAVNFDFGFYRYPSNTNTGSVSVKDVKLSIVR
Physico‐chemical
properties
protein length:528 AA
molecular weight: 58181,27340 Da
isoelectric point:5,04301
aromaticity:0,10606
hydropathy:-0,24545

Domains

Domains [InterPro]
DC_0004
STR
1–528
DC_0004
PS52031
LEC
24–201
PS52031
IPR039477
STR
62–132
IPR039477
YP_009097867.1
1 528
Architecture
STR
STR 1-528
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009097867.1
1 528
Domain Start End Length (AA) Confidence
N-terminal 1 75 75 0,3092
Central domain 76 311 237 0,5530
C-terminal 312 528 216 0,4968
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-75
Central
76-311
C-terminal
312-528

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage Miller
[NCBI] 		1527524 Uroviricota > Caudoviricetes > Pantevenvirales > Pseudotevenvirus > Pseudotevenvirus miller
Host Citrobacter
[NCBI] 		544 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae >
Host Citrobacter freundii
[NCBI] 		546 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009097867.1 [NCBI]
Genbank nucleotide accession
NC_025414 [NCBI]
CDS location
range 167488 -> 169074
strand +
CDS
ATGGCGAATAACGAATTCATGGCGTTATTCGGCCCTGATAGCTTTACGGCGAATGTGTTTTCAGAAGCAAACGCCGTAAAATATCGATTGGTTGTGCGTGGGGCTAATTTAAGCTCCACACTCAACGCAATTGAGGTTTCTATCAATGGGGCTGATATTATAAACAGAAACACACAACGAGATCGCGGAATTAACCTGGCGATTATTGATGGAACAACGTTAGCATTACTGGATTATAAGACATTTGATATGTATGGTGATCCTACTACGAACGGGAACGCGCTTAGGGACTATTTGGGTTCTCTTCCAGCGAATCGCATTGTGTGTTTTTATAGTTACGACGCAATAGGAAGTAACGCCAACTTTACCGCAATTATGCGTAAAATTGGTTCTGTTGCATGGCCGGAAGAACGTTTTTTCTCAAACGATGATCGTCGTCGTTCGTCGTATTCTGCCATATATTCATCAACCATGAAGAAAATCTGTATGGAAAACTTCGTGGGTGGATCTGGCAGTATATCACAGGATGATACGAGAAGTTTTGTTGAAGTTGTGTTTGACGAATTCAGCGACATCGGCGTTACTGGTATTCCTGAACGTATGGTCGATGATGTACAAACGTATCAGAACAGCGGTTCATTATATGGATATCATGGGTATGGTTCATGGAATATAGGAACCGATGTTTTTCGTGGGGATATATTCAAAGTAACTGGTGATCTGTATTGTTCACAAGAACTTCGTGACGCTGGCGGGGATACGTATCTGTATATCTGGACAGAAACTGCTGGTGCGCAATGGGTAGCGTCTTCTCTGTTGCGTACAACAAACTTAACTCCTGATACGTGGCATTCTTTGTCTATATATTTCACGATCCCGCAAGGCACAGAAAATGTCAAGATGGGTTGTCAAGTATATCATCATCCGTCAACCGTAAACGTAGGTCTTTCTCAATGTCGAAATGTACAAATCAGTAAAGTACCGCGTGAAGAAGTAAACAGAAACGGTGCTGCAATTGGTGTGAACGGTGTACGTATGCAGACGCTTTCCGAAGTTGACACAACCGGAACTGAAAACCCGATTGAACAGTTACTTTCATTGCCTGTATCACCTGCTGGAACTCCGAGCAATAAAACGATTGTTTCGCATAACTTCGCAGAACTTGATTATCTTGTTGCAGATCCAACGGAATATACATCAACCGATACAACCCAATATCTTGTTAAAGAATGGGCTAATAAACAATATGACTTCTCTAAAGTGTCATTGAGTAGTGTCGGGGCTAAACCTGGTGATGTTATCCGTGTTGCTGGACAGCTTAAACGTGATGCAACCGCGATTGCGAACAATAAACGAGCATTCATAATCATGCAGTTCCTTGATGCGAATAATCAGTATATTGGCGCACCACAACCAGTTATTATCCAGGATGTAAGCACAGTACCAAACGTGTATACATTCTACAAAAGCGAAGGTGTCGTTCCTGATGGTGCTGTAAACTTTGATTTCGGTTTTTATCGTTATCCCAGCAACACAAACACAGGTTCGGTTTCAGTTAAAGACGTTAAATTGTCTATCGTTCGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7f4fcf44fe8aa0e2131cf59ddff8da4ad134ddef6a9df8ef8a0c1b62859a5fe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6442
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50