Protein

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Genbank accession
YP_009277041.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTTQINGGALVDGSITDSKFAPNGKVDLAFTRANDAITQAAAAGTKADGALAKANAVEGTANNALSVANAAQSQVTGAVNAATAAQNAANAASTKADNAQTTANSASTKADNAQTTANSAVSAAATADSKATSALKKSADGAYMTYQNGVYAGYGFSEGTQASPGNLAWLFFNPPGTNGGLLNLAHYAPGGGAPDWVPLAFDPSAQTISQGKTTLSRVTVSSSTDPYSSQIGMTNTNGTGSFNQYWRLNKTNSVSEWINTDYSSVIASLSNAGLFKAYSGFDANGQRIQNVSYASVATDAIPMGQADIRYPRLGANSGQSSIQWDDNGWTGGYAIGSIYNNNGTIKAGYGAYGAGGTGWGSGLYFAFGSVAPWDVTNSGNKGLFVQSTGNTLKGDTTIQGTLTTTVAVNTNGMSIGSTSATNSGIEFGNSNGTVTTPFLDFHSSGNNIDYDARIVASGGNTSVGQGTLNLNAKWIGINGQLTMDKAVVASGGGDAMIHTTPDGGAFVDWASRRTTLNIDCPDPASAYGAIKWTQWGSRHLASIEGYAGGTTSSTPMIVFNVGGTSNHQWSGNNYTASGTITAQSDERYKKDWQPMPEDFIELLAEVLSGSYSRTDIDARQDGVGAQSLQKVLPNSVLTDKDGRLSVAYGNAALVAAIELAKQVVDLKKRVAQLEGK
Physico‐chemical
properties
protein length:676 AA
molecular weight: 69513,20270 Da
isoelectric point:5,24751
aromaticity:0,08136
hydropathy:-0,28047

Domains

Domains [InterPro]
DC_1954
STR
2–676
DC_1954
IPR030392
CHP
584–676
IPR030392
IPR030392
CHP
584–637
IPR030392 Coil
YP_009277041.1
1 676
Architecture
STR
STR 2-676
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009277041.1
1 676
Domain Start End Length (AA) Confidence
N-terminal 1 88 88 0,9390
Central domain 89 296 209 0,5301
C-terminal 297 676 379 0,7669
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-88
Central
89-296
C-terminal
297-676

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSP15
[NCBI] 		1785960 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009277041.1 [NCBI]
Genbank nucleotide accession
NC_030948.1 [NCBI]
CDS location
range 68296 -> 70326
strand -
CDS
ATGACGACACAAATTAACGGTGGGGCGCTAGTTGATGGATCGATTACGGATTCAAAATTCGCCCCCAATGGTAAGGTTGATCTTGCATTCACCCGTGCGAATGATGCAATCACCCAAGCCGCAGCCGCAGGGACTAAGGCTGATGGTGCTCTTGCTAAGGCGAATGCGGTTGAAGGGACTGCAAACAACGCATTGAGCGTTGCTAATGCGGCTCAATCTCAGGTTACCGGTGCTGTGAATGCTGCAACGGCTGCTCAGAATGCAGCCAATGCAGCAAGCACTAAAGCTGACAATGCCCAGACGACTGCAAATTCAGCAAGTACAAAGGCAGATAACGCACAGACTACAGCCAATAGCGCTGTTTCTGCTGCGGCCACCGCAGATTCAAAGGCTACTTCTGCTTTGAAGAAATCTGCTGATGGTGCTTACATGACATACCAGAATGGGGTTTATGCTGGTTATGGATTCTCTGAAGGTACTCAAGCTTCTCCGGGTAACCTAGCATGGCTTTTCTTCAATCCACCCGGGACTAATGGCGGGCTTCTAAATCTAGCCCATTATGCTCCGGGTGGTGGTGCTCCTGATTGGGTTCCTCTCGCATTCGATCCTTCGGCCCAGACTATTAGTCAAGGAAAGACTACTCTTTCTCGTGTGACAGTATCGAGTTCAACCGATCCATATTCTTCTCAGATTGGTATGACCAACACTAACGGGACAGGATCATTCAATCAATATTGGCGTTTGAATAAAACCAATTCAGTGAGTGAGTGGATCAATACAGATTATAGCTCGGTAATTGCAAGCCTTTCAAATGCTGGTTTGTTTAAGGCGTATTCTGGTTTTGACGCAAACGGTCAGAGAATTCAGAATGTTTCCTATGCTTCTGTTGCTACTGATGCAATTCCGATGGGTCAGGCCGATATTAGATACCCAAGATTGGGTGCAAACAGCGGTCAATCAAGCATTCAATGGGATGATAACGGTTGGACTGGCGGTTATGCCATCGGCTCTATCTATAACAATAACGGCACTATTAAGGCTGGTTATGGTGCGTATGGTGCTGGTGGTACTGGTTGGGGAAGTGGTCTTTATTTTGCCTTCGGTTCTGTTGCTCCTTGGGATGTAACGAACAGTGGGAATAAAGGTTTGTTTGTACAATCGACCGGCAACACGCTGAAGGGTGATACAACTATTCAGGGAACATTGACAACTACTGTTGCCGTGAATACAAATGGGATGTCAATTGGTAGCACAAGCGCTACTAACTCAGGTATCGAATTTGGTAATAGTAATGGAACAGTAACAACGCCATTCCTTGATTTTCACTCTTCTGGTAACAACATTGATTATGATGCTCGCATTGTCGCCTCTGGTGGTAATACCTCTGTGGGTCAAGGTACGCTCAACCTTAATGCTAAATGGATTGGTATAAACGGCCAATTGACAATGGATAAGGCTGTTGTTGCTTCGGGTGGTGGTGATGCCATGATCCATACAACTCCTGATGGCGGTGCATTTGTCGATTGGGCATCAAGAAGAACAACACTTAACATTGATTGTCCTGATCCTGCCTCTGCATATGGTGCTATCAAGTGGACACAATGGGGATCGCGTCATCTGGCTTCTATTGAAGGTTATGCGGGTGGTACAACCTCAAGCACACCAATGATTGTATTCAACGTTGGCGGTACTTCAAACCATCAATGGTCAGGAAACAACTACACCGCAAGCGGTACTATTACTGCCCAATCTGACGAAAGATACAAAAAGGATTGGCAACCGATGCCAGAAGACTTCATTGAGCTTTTGGCAGAAGTTTTGAGCGGTTCTTACTCACGTACTGACATCGATGCACGTCAAGACGGGGTTGGTGCTCAGAGTCTTCAAAAGGTTCTTCCTAACTCGGTTCTGACTGATAAAGATGGAAGATTGTCGGTTGCTTATGGTAACGCTGCTTTGGTTGCTGCCATTGAGCTAGCTAAACAAGTGGTTGATCTTAAGAAACGTGTTGCGCAGTTGGAGGGTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5aa5c0b0f95cb0ee65657d809eca981b52813125e8a5a84b059977b99d942179
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6347
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of a phage RSP15 infecting the phytopathogen Ralstonia solanacearum Kawasaki,T., Fujie,M., Chatchawankanphanich,O., Ogata,H. and Yamada,T. 2010-03 — GenBank