Protein

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Genbank accession
YP_004324284.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIHTSTNTLDRTNLATRPTDPDAKKAYSIKCYTKEDWVFIHEELEKDGSLEDNIPDPSIVCPDKKEHSDTRATYMLTDAEAEDLRKHEKVQWVCIDYDVYPGNYHPDPKDIVAGVQRFGRGVGSISNYRAFNTAPTGTRPPTTQAGIGATDKNRTGYQILRHTQKENPWDATFTGLTGSDHIIIEKENFQLGDGTGVDAIVSDDGFWIAHPEFVTTADDPVGWSTGNALTWSGISTTPGTCGVLDVLLDGPYYIDPDWFNADPGNRLTQRWDGTTVPVESVARAWWSDSSQRSAGFSTIGTTNGFSSFYSRQSCNGSNTQKPTNGSDHGTQCAGQVYGKNYGSAYNCNKWVLNGIGGSNAGINGSQFDIQKLFHLYKPNYDRHSAITGRQNDTKNPTLSSNSWGYRANTIHNGGYYWYRPSAIDGSETGTSYSSSSAPEFIDLLGAYGDGNRMKGEMVDSSVTAAGDELSEAGVIFVCAAGNSNQTQCSPGDLDFDNYWATSSQGDSRSLATATHSEFGLTCYNTINRRGWPQSLGKTTSGLSTAGTEYAAINIGALDDQYISSGLGGNTTDYKEKKVSYSDMGTGIDCYGAADDTLTADGRASSLTYVHPETYVGLGLTPYDVDFGGTSSGCPTCAGWITTKLQYNRGWTWRDVKSWLNNQCGTQDPDRFYYGDDITSFTATTAAWEDMYSHMAYGQGPVIIWDAPTGSPNEPKKPEIRITNSPNLKISGGVEIKFS
Physico‐chemical
properties
protein length:738 AA
molecular weight: 80359,76440 Da
isoelectric point:4,85117
aromaticity:0,10705
hydropathy:-0,62371

Domains

Domains [InterPro]
DC_1824
ATT
10–190
DC_1824 IPR015500 IPR036852
IPR036852
STR
73–670
IPR036852 DC_2022
IPR000209
ENZ
201–663
IPR000209
IPR036852
STR
285–685
IPR036852
IPR015500
Unmapped
324–337
IPR015500 IPR050131
IPR015500
Unmapped
627–643
IPR015500
YP_004324284.1
1 738
Architecture
ATT
STR
RBD
ATT 10-190 | STR 191-687 | RBD 688-738
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004324284.1
1 738
Domain Start End Length (AA) Confidence
N-terminal 1 87 87 0,0007
Central domain 88 306 220 0,6081
C-terminal 307 738 431 0,6215
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-87
Central
88-306
C-terminal
307-738

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM7
[NCBI] 		445686 Uroviricota > Caudoviricetes > Pantevenvirales > Lipsvirus > Lipsvirus ssm7
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324284.1 [NCBI]
Genbank nucleotide accession
NC_015287 [NCBI]
CDS location
range 184123 -> 186339
strand -
CDS
ATGATTCATACTAGTACGAACACTCTTGATAGGACCAATCTAGCGACTAGGCCTACTGATCCTGATGCTAAAAAAGCATACTCTATCAAATGTTATACCAAAGAGGATTGGGTATTCATCCACGAAGAGCTAGAAAAGGATGGTTCACTAGAGGATAATATACCTGATCCATCTATAGTATGTCCTGACAAAAAGGAACACAGTGATACCAGAGCAACTTATATGTTGACTGATGCAGAGGCAGAAGATTTAAGAAAACATGAGAAGGTGCAGTGGGTTTGTATCGACTATGATGTATATCCAGGCAACTATCATCCTGATCCAAAAGATATTGTTGCTGGTGTGCAAAGATTTGGCAGAGGAGTGGGTTCAATATCTAACTACAGAGCATTTAATACTGCACCTACTGGTACAAGACCACCAACAACTCAGGCTGGTATTGGTGCAACAGATAAAAACAGAACTGGATATCAAATACTAAGACATACTCAGAAAGAGAATCCTTGGGATGCAACATTCACTGGACTCACTGGATCAGACCATATTATTATAGAGAAAGAAAATTTTCAATTAGGTGACGGAACTGGTGTAGATGCAATCGTATCTGATGATGGTTTCTGGATTGCACACCCAGAATTTGTAACAACTGCCGATGATCCTGTAGGTTGGTCAACAGGAAACGCATTGACATGGAGTGGTATATCTACAACACCAGGCACATGTGGTGTCCTAGATGTACTTCTTGATGGTCCATATTATATTGACCCAGACTGGTTCAATGCAGATCCAGGCAATAGATTAACTCAACGTTGGGATGGTACAACAGTTCCAGTGGAATCTGTTGCTAGAGCATGGTGGTCTGATTCGAGTCAAAGATCAGCGGGATTCTCTACCATTGGTACTACTAATGGTTTCAGTAGTTTCTATAGTAGACAAAGTTGTAATGGAAGTAACACACAGAAACCAACTAACGGTTCTGATCATGGAACTCAGTGTGCTGGTCAAGTATATGGTAAGAATTATGGATCAGCATATAACTGCAACAAATGGGTATTAAATGGTATTGGTGGTTCTAATGCTGGAATCAATGGTAGTCAATTTGATATACAGAAACTCTTCCACTTATATAAACCAAACTATGATAGACATTCTGCTATTACTGGCAGACAAAATGATACTAAAAACCCCACATTGTCAAGTAATAGTTGGGGATATAGAGCAAACACCATACACAACGGTGGATACTATTGGTATAGACCATCAGCGATAGACGGATCTGAAACAGGGACATCATATAGTAGTTCATCCGCACCAGAATTTATTGATCTACTAGGTGCGTATGGTGATGGCAATAGAATGAAAGGTGAGATGGTAGACAGTTCTGTTACTGCTGCTGGTGATGAGTTGTCTGAGGCAGGAGTTATCTTCGTCTGTGCTGCTGGTAATAGTAATCAGACTCAATGCAGTCCTGGCGATCTTGACTTTGATAATTATTGGGCTACATCTTCTCAAGGTGATAGTCGGTCTTTAGCAACTGCAACTCATAGTGAATTTGGATTGACATGTTATAACACTATCAACAGAAGAGGGTGGCCACAGTCATTAGGTAAGACTACATCTGGTTTATCTACTGCTGGAACTGAGTATGCTGCTATCAATATTGGTGCGTTAGATGACCAATATATAAGTAGTGGACTGGGTGGTAATACCACAGACTATAAAGAAAAGAAAGTTTCCTATAGTGATATGGGAACAGGTATTGATTGTTATGGTGCGGCTGATGACACACTTACAGCAGATGGTAGAGCGTCATCTCTTACATATGTTCACCCAGAAACATATGTTGGTTTAGGACTTACTCCATATGATGTAGATTTTGGAGGCACAAGTTCTGGATGTCCTACATGTGCTGGGTGGATCACCACCAAACTACAATATAATAGAGGTTGGACTTGGAGAGATGTCAAAAGTTGGTTGAATAATCAATGTGGCACTCAAGATCCTGACAGATTTTACTACGGTGATGACATCACATCTTTCACTGCAACAACAGCTGCATGGGAAGATATGTACTCTCACATGGCATATGGTCAAGGACCTGTTATCATCTGGGATGCTCCTACTGGTTCACCTAATGAACCAAAGAAACCTGAGATCCGAATCACAAACTCCCCTAACCTTAAAATTAGTGGTGGAGTTGAAATAAAATTTTCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3fbf358efdf445e8c41937384522a85f24abe983bea4d5f1aa343fd7e1bff5f4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4417
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8109-3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank