Protein

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Genbank accession
YP_009601869.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MANEIGTATNFEDFFSKIVAFLTTNATLVAAGQAWQALRVRRDNIDTYTTSLPDSFTGNGRKQIHTFRYDPRSLNTNNPAQNGSESFWYTNSGFSAGSSYGQWKLRQAREVKTVRIKAPIGTSYASYAPKSFRLQYSDDGTAWTTALTVSNAPNWSAGERRDFAVPGTPGSHLYWKIIWDATQVVSYIGWQELLLLEADETVANHFGSEVILKALGNSGLDEIYTGIRAEYDSAAGWYNLFMNGYTGYDANEMSWFNQPGALPGYGAQYTRATPMVPLWNTTMPYWMVASGRSFRFCIKVGTNYEGGYLGFILPYATPNQYPYPLAVGGSLCPINDGSRSAEWRYSYVSFAHGVYPGPGTQSYPESENLWATLYLRSPEGAWNYHGNRSAYASYNSEGVGGPTVSSSPPYNVGINNAGLRNVWPHCMNGQWSSGLRPYRECLGGGYILQPCVLIQRSPAQVLGELEGTFAISGYQNSAENTTVFNGKTHVVFQNAYRNTIHEHWALSMD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56432,93910 Da
isoelectric point:6,32586
aromaticity:0,14342
hydropathy:-0,39745

Domains

Domains [InterPro]
DC_0072
STR
1–509
DC_0072
G3DSA:2.60.120.260
STR
72–188
G3DSA:2.60.120.260
IPR008979
STR
82–152
IPR008979
PF22633
RBD
82–163
PF22633
YP_009601869.1
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009601869.1
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 39 39 0,1513
Central domain 40 238 200 0,6788
C-terminal 239 509 270 0,9558
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-39
Central
40-238
C-terminal
239-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage LKO4
[NCBI] 		1308899 Uroviricota > Caudoviricetes > Mesyanzhinovviridae > Yuavirus > Yuavirus LKO4
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009601869.1 [NCBI]
Genbank nucleotide accession
NC_041934 [NCBI]
CDS location
range 53705 -> 55234
strand +
CDS
ATGGCAAACGAAATCGGAACCGCGACGAACTTTGAGGACTTCTTCAGCAAGATCGTCGCCTTTCTTACCACGAACGCGACCCTGGTGGCGGCGGGTCAGGCTTGGCAGGCGCTGCGCGTCCGCCGGGACAACATCGACACGTACACCACCAGCCTCCCGGACTCCTTCACGGGTAACGGTCGGAAGCAAATTCACACCTTCCGCTATGATCCGCGGTCGCTGAACACGAACAACCCCGCCCAGAACGGTTCGGAGTCCTTCTGGTACACCAACTCAGGCTTCTCCGCCGGGAGCAGCTATGGTCAATGGAAACTGCGACAGGCGCGCGAAGTCAAGACCGTGCGCATCAAGGCCCCCATCGGGACCAGCTACGCGAGTTATGCCCCCAAGTCCTTCCGGCTCCAATACTCGGATGACGGAACCGCCTGGACTACGGCCCTGACCGTCTCGAACGCGCCGAACTGGTCCGCCGGGGAGCGCCGGGACTTCGCCGTGCCCGGCACCCCGGGTTCGCACCTGTACTGGAAGATCATCTGGGACGCGACCCAGGTGGTGAGCTACATAGGGTGGCAGGAACTCCTCCTGCTCGAAGCGGACGAGACGGTGGCCAACCACTTTGGGTCGGAGGTCATCCTAAAGGCCCTGGGCAACTCGGGTCTGGATGAAATCTACACCGGCATCCGGGCGGAGTACGACAGCGCCGCTGGGTGGTACAACCTGTTCATGAACGGGTACACGGGCTATGACGCCAATGAAATGTCTTGGTTTAACCAACCGGGAGCCCTCCCGGGCTACGGGGCTCAATACACTCGGGCAACCCCGATGGTGCCGCTGTGGAACACCACCATGCCGTACTGGATGGTGGCTTCGGGCCGCTCCTTCCGGTTCTGTATCAAGGTCGGCACGAACTATGAGGGGGGCTATCTTGGTTTCATTCTCCCGTATGCTACGCCCAATCAATACCCGTACCCGCTCGCTGTCGGTGGTTCACTCTGCCCCATCAACGACGGCTCCCGGTCCGCGGAGTGGCGTTATTCATACGTGAGCTTCGCCCACGGCGTGTATCCCGGGCCGGGCACTCAGAGCTACCCGGAAAGCGAGAACCTGTGGGCGACCCTATACCTGCGCAGCCCGGAAGGAGCCTGGAACTACCACGGCAACCGTTCTGCTTACGCTTCGTACAACAGCGAGGGCGTAGGGGGTCCGACCGTTAGCAGCTCGCCTCCCTACAACGTCGGCATTAACAACGCCGGTTTGCGCAACGTCTGGCCTCACTGCATGAACGGCCAGTGGTCCTCGGGCCTTCGCCCCTACCGCGAGTGCTTGGGCGGCGGGTATATTCTCCAGCCTTGCGTGCTGATTCAGCGGTCGCCTGCCCAGGTACTCGGGGAGCTGGAGGGGACGTTTGCAATCAGCGGGTACCAAAACAGCGCGGAGAACACGACCGTGTTCAACGGCAAGACTCACGTGGTGTTCCAGAATGCTTACCGCAACACGATCCACGAGCACTGGGCGCTGTCGATGGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ba2fe69b5d04e59c2379231718ba9993f9057313ae41c52a0400604c44119984
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6366
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Pseudomonas aeruginosa Siphophage LKO4 Lammens,E.A. and Lavigne,R. 2016-11-04 — GenBank