Protein

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Genbank accession
XOD33064.1 [GenBank]
Protein name
pre-neck appendage preprotein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQKPELRRFEKLGEMMVQVYERYLPTAFDESMTLLEKMNKIIEYLNQIGRLTNDVVEEWNKVMEWILNDGLEDYVKETLEKWYEEGKFADLVIQVIDELKQFGVSVKTYGAVGDGKTDDIEAFEKAIASGYPVYIPNGKFAVSRSIKIPSNTVITGAGIDNAVVTFLDSVPLGDSLMINDNYATGNENIYLSDFTLDGNCQRFGVNAIGSGGSRDSNLSIHASKNVHIDRIKSINATLHGIDVTCGGLDYPYMGDGTTAPYPSRDIYISDCEAAFFGDDGITTHHSEYITISNCNCHDPRLLDNCNGIEIDDGSRHVQLSNNTSKNCYGGVEIKAHGNVPAAYNVSINGHMSIGDVRSYNFRHIGHHSATDPESLTAKNIICSNLISVNPNNKRGFQNNASPRVLAVSAYYGVVINGLSAYTDEPANLTGTAISVQFRARNVSLSGIVMTGFSMAENAIYVIGGSRGGDSVNISNVTLNNSGRNGVAVGSGIDNVSITNVSAIGDGVANPIAIVKTVNSNPQISGVNGIGYPVVCQVAGINYNDGLTLFNGAFRAATSSSEYIHSEGFVLGGTSKSGATASKSGVVASSSSVANAERSLISGSAGCTTNGSYNTILGSLNCETTNTGNLISTSSASKASGNRNIILASYGVLASGSYKVNGGFGGEGKPSATSIKWELDSLNGYIKAANTVTGANTWSDYGEYFETLDGRPIETGYLVTLEGGKIRKAQEGEKIIGAISETAGIILGESTWNWQGQYMKNEFGGLIYETVEIDEGVFEKMPKVNPSYNPELDYISRGERPEWNIVGLVGQIMVRIDDTVKIGNGISAKNGIATDGDTGIVMEITTPYEPSKGYGVAKVLLK
Physico‐chemical
properties
protein length:861 AA
molecular weight: 92013,62860 Da
isoelectric point:4,97577
aromaticity:0,07898
hydropathy:-0,19257

Domains

Domains [InterPro]
IPR012334
STR
83–550
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR011050
STR
102–463
IPR011050 IPR006626 DC_1692 IPR021865
IPR024535
ENZ
104–331
IPR024535 IPR006626 IPR006626 G3DSA:4.10.80.40
IPR006626
Unmapped
186–212
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
XOD33064.1
1 861
Architecture
STR
RBD
STR
RBD
STR 83-550 | RBD 551-574 | STR 575-630 | RBD 631-861
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD33064.1
1 861
Domain Start End Length (AA) Confidence
N-terminal 1 116 116 0,9864
Central domain 117 657 542 0,9740
C-terminal 658 861 203 0,9097
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-116
Central
117-657
C-terminal
658-861

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage vB_Bsu_W1188
[NCBI] 		3398194 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bacillus subtilis
[NCBI] 		1423 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD33064.1 [NCBI]
Genbank nucleotide accession
PV036491 [NCBI]
CDS location
range 4863 -> 7448
strand -
CDS
ATGCAGAAACCTGAGTTAAGACGTTTTGAAAAGTTGGGAGAAATGATGGTGCAAGTTTACGAACGCTATCTCCCTACTGCTTTTGATGAAAGTATGACCTTGTTAGAGAAAATGAATAAGATCATTGAGTACCTCAATCAGATTGGTCGCTTAACCAATGATGTTGTCGAGGAATGGAACAAGGTTATGGAATGGATTCTCAATGACGGTTTAGAAGACTACGTGAAAGAGACACTTGAGAAATGGTATGAAGAAGGAAAATTTGCCGATCTTGTTATTCAGGTGATAGACGAATTAAAACAGTTTGGCGTTAGTGTTAAAACATATGGCGCTGTGGGTGACGGAAAAACAGATGACATTGAGGCGTTTGAAAAAGCCATTGCTTCTGGATACCCTGTTTACATTCCAAATGGTAAATTCGCCGTATCACGATCAATTAAAATTCCATCAAACACAGTTATTACAGGTGCAGGGATTGACAACGCTGTAGTCACATTTCTTGATAGTGTTCCGTTAGGCGATAGCCTTATGATAAACGATAACTACGCAACTGGTAACGAAAATATCTATCTGTCTGATTTCACCCTCGACGGTAACTGTCAGCGATTCGGTGTAAATGCGATTGGTAGTGGTGGGTCACGGGATAGTAACTTGTCAATTCACGCATCTAAAAACGTGCATATTGACCGAATTAAATCTATTAACGCCACACTTCACGGAATTGATGTTACATGTGGGGGTCTTGATTATCCTTACATGGGTGACGGGACAACCGCACCGTATCCATCAAGAGATATTTATATCTCAGATTGTGAAGCCGCCTTCTTTGGTGACGATGGTATCACCACCCACCATAGTGAGTATATCACAATCAGCAATTGTAACTGCCATGACCCACGTTTACTTGATAACTGTAACGGCATTGAAATTGATGATGGTTCAAGACACGTTCAACTATCTAATAACACATCTAAGAATTGTTATGGCGGCGTTGAAATTAAAGCACACGGAAACGTACCAGCCGCATACAACGTTAGCATCAATGGTCATATGTCCATTGGAGACGTTCGATCATACAATTTCCGCCACATTGGACACCATTCAGCAACAGATCCGGAGTCATTGACAGCGAAAAACATTATCTGTAGCAACTTGATCTCTGTTAACCCTAATAATAAGCGTGGATTTCAAAACAATGCATCACCGAGGGTTTTGGCTGTATCAGCGTATTACGGGGTAGTGATTAACGGACTGAGTGCATACACTGATGAGCCAGCTAACTTAACAGGAACCGCAATTAGTGTTCAATTTAGAGCGAGAAACGTTAGTCTCTCAGGAATTGTTATGACAGGATTCAGCATGGCAGAAAACGCAATATATGTGATCGGTGGTAGCCGTGGTGGAGACAGCGTTAATATTTCAAACGTTACATTAAACAACTCAGGGAGAAACGGTGTTGCTGTTGGTTCAGGTATTGACAACGTTTCTATCACAAATGTTAGTGCCATCGGTGACGGTGTTGCGAATCCAATCGCTATTGTGAAAACAGTTAATAGTAACCCACAAATATCCGGTGTGAATGGTATTGGGTATCCGGTTGTGTGTCAAGTTGCTGGAATTAACTACAATGATGGTCTCACACTCTTTAACGGGGCATTCCGTGCGGCAACATCATCGAGTGAATACATCCACAGTGAGGGGTTTGTGTTAGGCGGAACAAGTAAATCAGGGGCAACAGCATCCAAGTCCGGTGTTGTGGCGTCTAGTTCATCTGTTGCTAATGCCGAGCGTTCACTAATTTCAGGTAGTGCTGGATGCACAACTAACGGCTCTTATAACACAATCCTAGGTTCGTTGAACTGTGAAACAACAAACACCGGAAACCTTATTTCAACGTCGTCGGCGTCTAAGGCATCCGGAAACCGTAATATTATTCTTGCAAGTTACGGTGTTCTAGCAAGTGGTTCATACAAAGTAAACGGTGGGTTCGGTGGAGAAGGAAAACCAAGTGCGACTAGTATTAAATGGGAGTTAGATTCACTCAATGGTTACATCAAAGCCGCAAACACTGTTACCGGAGCGAACACATGGAGTGACTACGGTGAATACTTTGAAACTCTTGATGGGCGACCCATTGAAACGGGTTATCTTGTTACTCTTGAGGGTGGTAAGATACGGAAAGCACAGGAAGGTGAAAAAATCATAGGCGCTATTTCTGAAACGGCTGGTATTATTCTTGGTGAAAGCACATGGAACTGGCAGGGACAATATATGAAAAATGAGTTTGGCGGGTTAATCTATGAAACCGTGGAAATAGATGAGGGTGTATTTGAAAAAATGCCTAAAGTCAATCCATCTTATAACCCTGAACTAGATTACATTTCTCGCGGAGAGAGACCTGAGTGGAATATTGTTGGATTGGTTGGTCAAATCATGGTTCGTATTGATGACACTGTGAAAATCGGCAACGGAATCTCTGCTAAGAATGGAATTGCAACAGACGGCGACACCGGTATTGTTATGGAAATCACAACCCCTTATGAACCTAGTAAGGGTTACGGTGTGGCAAAAGTGTTACTGAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2b95a348525c163505da2cb8af6a9c9e0253847b7af14d77849d33767f312440
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3447
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50