Protein

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Genbank accession
YP_009324357.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADRFPLIVNPVSQKIEEIVAGDNLDLTGNNIVVGGDTGAGKYLTSDGSVVSWGAPGDVYLDQSQTVTNKTFETCSISGVLNTLVNIPNSSLTNSRITINGTDVPLGGSINTANDNTTYTISAVDGATAVEKIIRLTSAGFGSGVTDDITLAEGSNVTLTRSGDTITIASSFTDTNTVTELRGTTSGNYVTGQVTIAGGGDTTVTQVGNTITVSTNDQDTITRVKGGVSGTFESGDISILQAGATTVSQTGNNITVSSQDTITTLEADDASGTAVTGAVVIAATNAASVSQSGNTITIDAVDTNTVTRVRATATGTYNSGDITIVGSGATTVSQVGTTITVDSEDTDTTYQASNGLNLSGTSFELKNNANLLQDKLSKWDASNAQFTNSIISDDGSTVTVDGNLTVNGTSNKVVFETQTLVIADEQIELRKGNSITGQNGGLQVNRTTDATGTVLTYSAMQWFETGGYWRVYNGINAFRLVTETETQTLTNKTLTSPTMTNPTLGIASATSFNKLIITAPANSATLTIADGKTVTANNTVTLSGVDNSTISFGNGGLVAYRADKLSVFAATTSTELRGTITDETGIGALVFAQSPTLINSIITSSESFDIINTSATTVNAFGAATSITIGSNSSGTTVIRHGLDVNGAVTLGTDENNAITVNGVLSSANTDLYIRGSRAGLGNNDTVTNLIFGLNSGSNFTTGDFNTSYGYETLYLDNEGSRNAGFGYNALRNTTTGSDNTAVGYRALRDNVVGARNTAVGQGALENNQIGGDNVCIGYYAGYGLSGSGNVLIGSASTGDSTSFTYAPLTPTGNNQLVIGSGTDYWLRGDGSFNVTIAHDLNVSNNLNIGGNLTVEGQLTTLNINTLTVDDKNIELAAVEVLLGKSGDVSGTTIINIASTDDMYAGQQLFKVSGTGVIGTGAYITSIDSDTQISYTITGGAITNGDIVFDVGGPNDDTADGAGITVLGSTNKTFNWVKSSAAFTSSEHINIASGKTLKMATVEVISGSRIGPTTGSYLIGAGVAAFEGSIEPNTDANLDFGSPTKRWANIYSADLQLSNEGSANDVDGTWGQYTIQEGEEDLFLINRRSGKKYKFMLQEVN
Physico‐chemical
properties
protein length:1101 AA
molecular weight: 113580,78700 Da
isoelectric point:4,22668
aromaticity:0,05995
hydropathy:-0,10372

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009324357.1
1 1101
Domain Start End Length (AA) Confidence
N-terminal 1 655 655 0,5893
Central domain 656 858 204 0,8368
C-terminal 859 1101 242 0,6428
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-655
Central
656-858
C-terminal
859-1101

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-WAM2
[NCBI] 		1815522 Uroviricota > Caudoviricetes > Pantevenvirales > Cymopoleiavirus > Cymopoleiavirus swam2
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009324357.1 [NCBI]
Genbank nucleotide accession
NC_031935 [NCBI]
CDS location
range 165255 -> 168560
strand +
CDS
ATGGCTGATCGTTTTCCCCTCATTGTCAATCCAGTTTCCCAGAAAATCGAAGAAATTGTAGCAGGTGACAATTTGGACTTAACTGGCAACAATATTGTTGTTGGCGGAGATACTGGTGCTGGGAAATATTTAACGAGTGACGGTTCGGTAGTATCTTGGGGAGCACCTGGAGATGTATACTTAGATCAATCACAGACTGTTACTAACAAAACATTTGAAACTTGTAGTATTTCTGGTGTTCTGAATACACTAGTTAATATTCCTAATTCATCTTTAACCAATTCGAGAATTACAATTAACGGAACTGACGTTCCTCTTGGCGGTTCAATTAATACCGCAAATGACAATACTACCTATACTATTTCTGCTGTTGATGGTGCAACTGCTGTTGAAAAAATTATTAGACTTACATCTGCAGGATTTGGATCTGGTGTAACGGATGACATTACTCTTGCGGAAGGAAGTAATGTAACATTAACCAGATCTGGTGATACAATTACAATTGCATCTTCATTTACTGATACTAATACAGTAACAGAACTGAGAGGAACAACTTCTGGAAACTATGTAACTGGACAAGTTACTATTGCTGGCGGCGGAGACACGACTGTCACTCAGGTTGGTAACACAATTACAGTTTCTACTAACGATCAAGACACCATCACTAGAGTAAAGGGTGGTGTTAGTGGAACATTTGAGAGTGGAGACATCAGTATCCTTCAAGCTGGAGCAACTACTGTATCTCAGACAGGAAATAATATTACCGTTTCTTCTCAAGATACAATTACTACATTAGAAGCAGATGATGCATCAGGAACTGCAGTAACTGGGGCAGTAGTAATTGCAGCAACAAATGCTGCATCTGTATCACAGTCTGGTAATACTATTACTATTGATGCTGTAGATACAAACACTGTAACTAGAGTTAGAGCGACCGCAACAGGAACATATAATTCAGGTGATATTACAATTGTTGGTTCTGGAGCAACTACTGTTTCGCAGGTGGGAACAACAATTACTGTTGATTCTGAGGACACTGATACAACATATCAAGCAAGCAATGGATTAAATCTTAGTGGAACTTCGTTTGAACTTAAAAATAATGCAAACTTACTTCAAGACAAGTTATCGAAGTGGGACGCTAGCAACGCTCAGTTTACAAACTCTATCATCTCTGACGATGGTTCAACAGTAACCGTTGATGGTAACTTGACTGTTAATGGAACATCAAACAAAGTAGTATTTGAAACTCAAACTCTTGTTATTGCAGATGAGCAAATTGAACTAAGAAAAGGAAACAGTATTACTGGTCAGAATGGTGGTCTTCAGGTTAACAGAACTACTGATGCTACTGGAACAGTATTGACATACTCTGCAATGCAGTGGTTTGAAACTGGTGGATATTGGAGAGTATACAATGGAATCAATGCTTTCCGTTTAGTGACTGAGACGGAAACACAGACACTAACTAACAAGACTTTAACATCTCCAACGATGACAAATCCCACATTGGGAATTGCATCTGCGACATCTTTTAACAAGTTAATTATTACCGCACCAGCAAACTCTGCAACTTTGACAATTGCTGATGGCAAAACTGTTACTGCTAACAATACTGTAACTCTATCTGGTGTAGATAACTCAACTATTTCATTTGGAAATGGTGGTTTGGTCGCATATAGAGCAGATAAACTATCTGTATTTGCTGCAACAACATCAACAGAACTTCGTGGTACTATCACGGATGAAACTGGTATTGGAGCACTTGTATTTGCACAAAGTCCGACACTTATTAATAGCATTATTACAAGTTCTGAATCATTTGACATTATTAATACTTCAGCAACAACTGTAAATGCTTTTGGTGCTGCAACTTCTATTACAATTGGATCTAATTCTTCTGGAACAACAGTAATCAGGCATGGTCTTGATGTAAATGGTGCTGTAACTCTAGGAACAGATGAGAACAATGCTATTACTGTCAATGGTGTTCTAAGTTCTGCAAATACAGATCTCTATATACGTGGAAGTAGAGCGGGTCTTGGCAATAACGACACTGTTACTAATCTTATCTTTGGTTTAAACTCTGGTAGCAACTTTACAACTGGTGATTTCAACACATCCTATGGATATGAGACACTGTATCTTGATAATGAAGGATCACGAAACGCAGGATTTGGTTACAATGCTCTGAGAAATACAACCACTGGATCTGACAATACTGCGGTTGGATATAGAGCTCTAAGAGACAATGTTGTTGGGGCAAGAAATACTGCTGTTGGTCAAGGTGCTCTAGAGAATAATCAGATTGGTGGAGACAACGTTTGTATTGGTTACTATGCTGGTTATGGACTGAGTGGTAGTGGAAATGTTCTAATCGGATCTGCTTCTACTGGAGATTCAACGTCATTTACATATGCACCTCTAACTCCAACTGGTAACAACCAACTTGTTATTGGATCTGGAACTGATTATTGGTTGCGTGGTGATGGTAGTTTTAACGTAACTATTGCTCATGATTTAAACGTATCAAACAATCTAAACATTGGTGGCAACCTCACAGTAGAGGGACAATTGACCACATTAAATATCAATACACTAACAGTCGATGATAAGAATATCGAACTGGCAGCAGTTGAAGTTCTCCTTGGTAAAAGTGGTGATGTTTCTGGAACAACGATCATTAATATTGCAAGCACTGATGACATGTATGCTGGACAGCAACTGTTCAAGGTATCTGGAACAGGTGTTATTGGAACTGGTGCTTATATTACTAGTATTGATAGTGATACTCAAATTTCATACACAATTACTGGTGGTGCTATCACTAATGGTGACATTGTATTTGATGTTGGTGGACCGAATGACGACACAGCTGACGGAGCGGGAATTACAGTTCTTGGTTCTACAAACAAGACCTTTAACTGGGTTAAGTCTTCGGCAGCATTCACAAGTTCTGAGCACATTAATATTGCATCGGGCAAAACACTTAAGATGGCAACGGTTGAAGTCATCTCTGGTTCTAGAATTGGACCTACTACGGGATCATATCTCATCGGTGCTGGTGTTGCAGCATTTGAAGGATCTATTGAACCAAACACTGATGCAAATCTTGACTTTGGTTCGCCCACTAAGCGTTGGGCGAACATCTACTCTGCTGACCTTCAACTCTCCAACGAAGGTAGTGCTAATGATGTAGACGGAACCTGGGGTCAATACACAATTCAAGAGGGTGAGGAAGACCTGTTCCTAATCAATAGAAGGAGCGGTAAGAAGTATAAGTTCATGCTTCAGGAGGTCAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b2ba47e3356005c689cd911c3bd841c6d28ee0c10e54ef0fc73ac2cffb9ec0ae
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2887
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50