Protein

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Genbank accession
YP_009877006.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFNQPKGSTSWNINRKAIARAANVAESAVIFSSETTVNLDSKTVIYDETAQKIWGKPSGIPNGVKIISVSGSNLTYTGPVTVPLVSYTGSADEMVARLGIVPHRAKISDDLNAIDRRPDGYGGSFASVLANGQDVQVNKDVNLTSPILPGDYQVIQGAGGSVTMTSIARAVSIASKKGVFVRMLRAIGSVVNGASTGNVAYACVASDSSNIHVDYIDASKFTGAVEFLRTSDFTIRNVMARNMRYHPDVVAGGYGVLLEGCTRGLVDGINFRASNEDGDLGRHAVYISVDSSGNFCEDIIVRNIIATYSNIDNRDMPAAVVRKSNRCMIDGFDINGSNGGIGLNADNGAIQDFQIRNGHMKIIQYDDNAIYGISGGVDNTPATVIGLRVDNVTIEMEVKSGVTPTTVRLHGLNMTCRDSRFTNLRFKSHGSSNPILVPVGAMNLVFDGISDFVTAGSATGAALIRFQGTNSNISVFNVKTARAVFVGLDNVTDLTVNWERFARIVNNNGTITTTDSNSLISSVTTTGTGEITVVFKNHVTTDAVRNCTVTPASVAGLVVLPEITGRNLVLRFYNGSGTLVPLSSSIVSADIRLHS
Physico‐chemical
properties
protein length:598 AA
molecular weight: 63494,84040 Da
isoelectric point:7,11138
aromaticity:0,06355
hydropathy:0,01405

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–92
G3DSA:3.30.2020.50 DC_1683
YP_009877006.1
1 598
Architecture
ATT
STR
ATT 1-92 | STR 120-598
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009877006.1
1 598
Domain Start End Length (AA) Confidence
N-terminal 1 124 124 0,8539
Central domain 125 503 380 0,9921
C-terminal 504 598 94 0,9835
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-124
Central
125-503
C-terminal
504-598

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacter phage EspM4VN
[NCBI] 		2137745 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Enterobacter asburiae
[NCBI] 		61645 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009877006.1 [NCBI]
Genbank nucleotide accession
NC_049384 [NCBI]
CDS location
range 68796 -> 70592
strand +
CDS
ATGAATCCGCAATTCAATCAGCCGAAAGGCTCGACGTCTTGGAACATCAACCGCAAGGCCATTGCCCGCGCTGCGAACGTGGCCGAAAGTGCTGTTATCTTCAGTTCTGAAACAACTGTGAATCTGGATAGCAAGACCGTCATTTATGATGAAACCGCGCAAAAGATTTGGGGCAAACCATCTGGTATCCCGAATGGTGTCAAGATCATTTCAGTATCCGGTTCTAACTTGACATACACAGGTCCGGTTACTGTTCCTTTGGTGTCGTACACGGGTTCAGCAGATGAAATGGTGGCACGACTGGGTATTGTACCACACCGTGCCAAAATCAGTGATGATCTCAACGCCATTGACCGTCGCCCTGACGGTTATGGCGGATCATTCGCTTCGGTCCTGGCGAATGGCCAGGATGTACAGGTCAATAAAGACGTAAATTTGACCAGCCCTATTCTTCCTGGGGATTATCAGGTAATTCAGGGTGCTGGCGGCAGCGTTACCATGACCAGCATAGCGCGAGCAGTCAGTATCGCCTCCAAGAAAGGGGTTTTCGTCAGGATGCTCCGGGCGATAGGTTCTGTTGTCAATGGCGCATCAACTGGGAACGTTGCATACGCTTGCGTAGCTTCTGATTCAAGCAATATACACGTCGACTATATTGATGCCTCCAAATTCACTGGAGCCGTGGAATTCCTGAGAACTAGTGATTTCACCATCAGGAATGTTATGGCGCGAAATATGAGGTATCATCCAGATGTTGTGGCAGGTGGGTATGGCGTGTTGTTGGAAGGTTGTACTCGCGGCCTGGTTGACGGAATCAATTTCAGGGCATCGAACGAAGACGGCGACCTCGGGCGTCATGCTGTGTATATTTCCGTGGACTCTAGTGGTAATTTCTGCGAAGATATTATTGTCAGAAACATTATTGCGACTTATTCTAATATTGACAACCGTGATATGCCTGCTGCCGTTGTAAGGAAGAGCAACCGCTGCATGATTGATGGATTTGATATAAATGGTTCAAACGGCGGCATTGGACTGAATGCGGATAACGGCGCTATTCAAGACTTTCAAATCCGAAACGGTCACATGAAGATCATCCAGTATGATGATAACGCCATTTATGGAATATCTGGAGGCGTAGACAACACTCCAGCAACTGTTATTGGGTTGAGAGTTGACAACGTCACTATTGAGATGGAAGTCAAATCCGGTGTGACCCCGACAACTGTCCGCCTGCACGGTCTGAACATGACGTGTCGTGACAGCCGTTTTACTAACTTGAGATTCAAAAGTCACGGGTCTTCGAACCCAATTCTTGTCCCTGTCGGAGCGATGAATCTGGTGTTCGACGGTATTTCGGATTTTGTGACAGCAGGATCGGCAACGGGAGCCGCCCTCATCCGTTTCCAAGGGACCAACAGCAATATCAGTGTGTTCAACGTGAAGACAGCACGAGCCGTGTTTGTCGGCCTTGATAATGTGACTGATCTGACGGTCAACTGGGAGCGTTTCGCTCGCATCGTGAACAACAACGGAACGATCACCACCACTGATTCTAACTCGCTGATCAGTTCGGTTACGACTACGGGCACTGGGGAAATCACTGTTGTGTTCAAGAACCATGTGACGACTGACGCAGTACGCAACTGCACTGTGACTCCAGCGAGCGTGGCGGGGTTGGTAGTTCTTCCAGAGATAACAGGTAGAAACTTGGTGTTGCGCTTCTACAACGGTAGTGGAACTCTTGTACCTCTTTCCTCTTCGATTGTCAGCGCAGATATCCGACTGCATTCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bb112640e645afe752af3841305a9e5dd14354ba401efb02661e3e4a1a8f9aba
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7423
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genome Structure of Virulent Phage EspM4VN to Control Enterobacter sp. M4 Isolated From Plant Soft Rot Thanh,N.C., Nagayoshi,Y., Fujino,Y., Iiyama,K., Furuya,N., Hiromasa,Y., Iwamoto,T. and Doi,K. 2020 — GenBank